Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PCP45_RS00400 Genome accession   NZ_CP115270
Coordinates   69022..69666 (-) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain F019     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 64022..74666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP45_RS00380 (PCP45_00380) - 64863..65723 (+) 861 WP_224792188.1 fimbrial protein -
  PCP45_RS00390 (PCP45_00390) pgsA 66601..67161 (-) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PCP45_RS00395 (PCP45_00395) uvrC 67195..69021 (-) 1827 WP_329037806.1 excinuclease ABC subunit UvrC -
  PCP45_RS00400 (PCP45_00400) letA 69022..69666 (-) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PCP45_RS00405 (PCP45_00405) pqsH 70008..71156 (-) 1149 WP_023125848.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  PCP45_RS00410 (PCP45_00410) - 71774..72802 (+) 1029 WP_019485641.1 AraC family transcriptional regulator -
  PCP45_RS00415 (PCP45_00415) - 72818..74032 (-) 1215 WP_003130955.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=700614 PCP45_RS00400 WP_003090351.1 69022..69666(-) (letA) [Pseudomonas aeruginosa strain F019]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=700614 PCP45_RS00400 WP_003090351.1 69022..69666(-) (letA) [Pseudomonas aeruginosa strain F019]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAGCTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCTTGGAGGCGACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGACCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAACTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537