Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   NGM19_RS07310 Genome accession   NZ_CP099548
Coordinates   1567795..1568268 (+) Length   157 a.a.
NCBI ID   WP_228134840.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ6079     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1562795..1573268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS07280 (NGM19_07280) kdsB 1563457..1564218 (+) 762 WP_039047964.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NGM19_RS07285 (NGM19_07285) - 1564220..1565206 (+) 987 WP_039047965.1 DNA polymerase III subunit delta' -
  NGM19_RS07290 (NGM19_07290) - 1565433..1565777 (+) 345 WP_252665976.1 PilZ domain-containing protein -
  NGM19_RS07295 (NGM19_07295) - 1565800..1566573 (+) 774 WP_039047966.1 TatD family hydrolase -
  NGM19_RS07300 (NGM19_07300) - 1566612..1567220 (+) 609 WP_039047967.1 TetR/AcrR family transcriptional regulator -
  NGM19_RS07305 (NGM19_07305) - 1567233..1567781 (+) 549 WP_039047968.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NGM19_RS07310 (NGM19_07310) xcpV 1567795..1568268 (+) 474 WP_228134840.1 type II secretion system minor pseudopilin GspI Machinery gene
  NGM19_RS07315 (NGM19_07315) xcpW 1568265..1568993 (+) 729 WP_228134839.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NGM19_RS07320 (NGM19_07320) gspK 1568990..1569949 (+) 960 WP_039047969.1 type II secretion system minor pseudopilin GspK -
  NGM19_RS07325 (NGM19_07325) - 1570056..1570652 (+) 597 WP_004954093.1 6-carboxytetrahydropterin synthase -
  NGM19_RS07330 (NGM19_07330) ung 1570691..1571404 (+) 714 WP_004911491.1 uracil-DNA glycosylase -
  NGM19_RS07335 (NGM19_07335) - 1571401..1572525 (+) 1125 WP_171053792.1 enoyl-CoA hydratase/isomerase family protein -
  NGM19_RS07340 (NGM19_07340) tadA 1572532..1573035 (+) 504 WP_004962178.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17593.46 Da        Isoelectric Point: 9.4351

>NTDB_id=700607 NGM19_RS07310 WP_228134840.1 1567795..1568268(+) (xcpV) [Acinetobacter junii strain AJ6079]
MTNRQFSLLDKKSDCLNFQTIAEVKLDSLKIQKGFTLLEVMVALAIFAVAAIALTKIAMQYTQSTSNAILRTKAQFVAMN
EIATMEINQEWLEGIQSKQVTAQGETWQIDKKAQSTLSPKIQRIELQVSLYNIEQGKVEAGITNLVFFNYPAKVKTS

Nucleotide


Download         Length: 474 bp        

>NTDB_id=700607 NGM19_RS07310 WP_228134840.1 1567795..1568268(+) (xcpV) [Acinetobacter junii strain AJ6079]
ATGACTAATCGACAATTTAGTTTGCTTGATAAAAAATCAGATTGTCTTAATTTTCAAACAATTGCTGAGGTTAAACTAGA
TTCTCTCAAAATACAGAAAGGTTTTACGCTGTTAGAGGTGATGGTTGCTTTAGCTATTTTCGCGGTCGCTGCAATCGCGT
TAACTAAAATAGCTATGCAGTATACCCAATCAACTTCAAATGCAATTTTGCGTACTAAAGCCCAATTTGTGGCAATGAAT
GAAATTGCAACCATGGAAATAAATCAAGAGTGGCTTGAAGGAATACAATCTAAACAAGTGACTGCGCAGGGAGAAACTTG
GCAAATTGATAAAAAAGCACAATCAACATTAAGCCCAAAAATTCAACGCATCGAGTTACAAGTAAGTTTATATAACATTG
AACAAGGCAAAGTTGAGGCAGGAATTACCAATCTTGTATTCTTTAATTATCCTGCTAAAGTCAAAACATCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(30-54)

Type II secretion system (T2SS), protein I (T2SSI)

(71-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

81.301

78.344

0.637