Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PCP43_RS22930 Genome accession   NZ_CP115267
Coordinates   4890176..4890820 (-) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain F021     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4885176..4895820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP43_RS22905 (PCP43_22900) - 4885223..4885396 (+) 174 WP_023087250.1 hypothetical protein -
  PCP43_RS22910 (PCP43_22905) - 4885460..4887382 (-) 1923 WP_023087249.1 tyrosine-type recombinase/integrase -
  PCP43_RS22920 (PCP43_22915) pgsA 4887755..4888315 (-) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PCP43_RS22925 (PCP43_22920) uvrC 4888349..4890175 (-) 1827 WP_003097551.1 excinuclease ABC subunit UvrC -
  PCP43_RS22930 (PCP43_22925) letA 4890176..4890820 (-) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PCP43_RS22935 (PCP43_22930) pqsH 4891162..4892310 (-) 1149 WP_003119987.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  PCP43_RS22940 (PCP43_22935) - 4892928..4893956 (+) 1029 WP_003097554.1 AraC family transcriptional regulator -
  PCP43_RS22945 (PCP43_22940) - 4893972..4895186 (-) 1215 WP_003113355.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=700484 PCP43_RS22930 WP_003090351.1 4890176..4890820(-) (letA) [Pseudomonas aeruginosa strain F021]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=700484 PCP43_RS22930 WP_003090351.1 4890176..4890820(-) (letA) [Pseudomonas aeruginosa strain F021]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAGCTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCGACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537