Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HPTL_RS07105 Genome accession   NZ_AP018558
Coordinates   1456904..1457701 (+) Length   265 a.a.
NCBI ID   WP_119335361.1    Uniprot ID   A0A2Z6DYU2
Organism   Hydrogenophilus thermoluteolus strain TH-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1451904..1462701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPTL_RS07085 (HPTL_1375) phbB 1452563..1453303 (-) 741 WP_119335358.1 acetoacetyl-CoA reductase -
  HPTL_RS07090 (HPTL_1376) - 1453367..1455160 (-) 1794 WP_197713626.1 alpha/beta hydrolase -
  HPTL_RS07095 (HPTL_1377) pgeF 1455179..1455937 (-) 759 WP_170141298.1 peptidoglycan editing factor PgeF -
  HPTL_RS07100 (HPTL_1378) - 1455955..1456905 (-) 951 WP_119335360.1 RluA family pseudouridine synthase -
  HPTL_RS07105 (HPTL_1379) comL 1456904..1457701 (+) 798 WP_119335361.1 outer membrane protein assembly factor BamD Machinery gene
  HPTL_RS07115 (HPTL_1380) ppsA 1457978..1460341 (-) 2364 WP_119335362.1 phosphoenolpyruvate synthase -
  HPTL_RS07120 (HPTL_1381) - 1460438..1461277 (+) 840 WP_119335363.1 pyruvate, water dikinase regulatory protein -
  HPTL_RS07125 (HPTL_1382) - 1461291..1462502 (+) 1212 WP_119335364.1 DUF2863 family protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 30958.15 Da        Isoelectric Point: 5.5055

>NTDB_id=70046 HPTL_RS07105 WP_119335361.1 1456904..1457701(+) (comL) [Hydrogenophilus thermoluteolus strain TH-1]
MKRWFLVTMAAATLAGCGLLPEKIDETRSWNAQKLYSEARAAMDDGDYQRAAELLEKLESRYPFGRYAQQAQIETAYAYY
KQGEPELALAAIERFLRLHPDHPNLDYMLYLKGLILFNEDRSLFAALGNQDMSERDPKAAKESLEVFLELLRRFPESKYA
EDAEARVIYLRNSLARHELHVARYYLKRGAYLAAANRAKVVVTDYSDTPLVEDALWLMREAYDRLGLTDLKTDAERVLQL
NFPDSDYLKYGERRSKDEKPWWQFW

Nucleotide


Download         Length: 798 bp        

>NTDB_id=70046 HPTL_RS07105 WP_119335361.1 1456904..1457701(+) (comL) [Hydrogenophilus thermoluteolus strain TH-1]
ATGAAACGCTGGTTTCTTGTGACGATGGCCGCCGCAACACTTGCCGGCTGTGGGTTGCTCCCCGAAAAGATCGACGAAAC
GCGCTCATGGAACGCGCAAAAGCTCTATAGCGAAGCGCGGGCGGCGATGGACGATGGCGACTATCAGCGTGCTGCCGAGC
TCTTGGAAAAGCTGGAATCGCGCTACCCCTTCGGCCGTTATGCGCAGCAGGCGCAAATCGAAACGGCCTATGCTTACTAC
AAACAAGGGGAGCCGGAGCTCGCGCTGGCGGCGATCGAGCGCTTCTTGCGGCTCCACCCGGACCATCCGAACCTCGATTA
TATGCTCTACCTCAAAGGGCTGATCCTCTTCAACGAAGACCGCAGCCTCTTTGCCGCGCTCGGCAACCAAGACATGAGCG
AGCGCGACCCGAAAGCGGCAAAAGAGTCGCTTGAAGTCTTCCTGGAGCTGTTGCGCCGCTTTCCGGAAAGCAAATACGCG
GAAGACGCCGAGGCGCGGGTGATCTACTTGCGCAACAGCCTGGCGCGGCATGAGCTCCACGTGGCCCGTTACTATCTCAA
GCGCGGCGCTTATCTGGCCGCGGCCAACCGCGCGAAGGTAGTCGTGACCGATTACTCCGATACCCCGCTCGTCGAAGACG
CGCTCTGGTTGATGCGCGAAGCGTATGACCGCTTGGGGCTCACCGATCTCAAAACCGACGCGGAACGTGTGTTACAACTC
AACTTTCCCGATTCCGACTACCTCAAATATGGGGAGCGGCGAAGTAAAGACGAAAAACCGTGGTGGCAGTTCTGGTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z6DYU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

48.881

100

0.494
  comL Neisseria gonorrhoeae MS11

48.507

100

0.491

Multiple sequence alignment