Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NG828_RS05835 Genome accession   NZ_CP099530
Coordinates   1364896..1366284 (-) Length   462 a.a.
NCBI ID   WP_267083000.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain YT9-19-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359896..1371284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG828_RS05815 (NG828_05800) - 1360175..1361125 (-) 951 WP_267082998.1 YbhN family protein -
  NG828_RS05820 (NG828_05805) - 1361122..1361910 (-) 789 WP_153751087.1 class I SAM-dependent methyltransferase -
  NG828_RS05825 (NG828_05810) - 1361933..1362790 (-) 858 WP_267082999.1 glycosyltransferase family 2 protein -
  NG828_RS05830 (NG828_05815) pilB 1362921..1364654 (+) 1734 WP_026144655.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NG828_RS05835 (NG828_05820) pilR 1364896..1366284 (-) 1389 WP_267083000.1 sigma-54 dependent transcriptional regulator Regulator
  NG828_RS05840 (NG828_05825) - 1366367..1367980 (-) 1614 WP_150409178.1 ATP-binding protein -
  NG828_RS05845 (NG828_05830) sucC 1368371..1369540 (+) 1170 WP_010342227.1 ADP-forming succinate--CoA ligase subunit beta -
  NG828_RS05850 (NG828_05835) sucD 1369563..1370438 (+) 876 WP_010342226.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49836.23 Da        Isoelectric Point: 6.6702

>NTDB_id=700417 NG828_RS05835 WP_267083000.1 1364896..1366284(-) (pilR) [Xanthomonas sacchari strain YT9-19-2]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAKHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIQVLRGLVKHALELNSDSRAAPPPPAPEQASRLLGASAAMDALRSTIAKVAR
NQAPVYILGESGVGKELVARTIHEQGARSAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAATEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRPTPLLSPSALDALSSYAFPGNVRELENILERALAMAEDDQISATDLRLPQPGNHARSAAEAAPA
LPRGVVDIDPSSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=700417 NG828_RS05835 WP_267083000.1 1364896..1366284(-) (pilR) [Xanthomonas sacchari strain YT9-19-2]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAGTTGCTGGTCCTGACCCTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAACTGCTGGCGAGCAATCCCTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCAAGCATTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCAGGTGCTGCGCGGCCTGGTCAAGCATGCACTGGAACTCAACAGCGACAGCCGCGCCGCGCCGCCGCCGCCGG
CCCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCGATGGACGCCCTGCGCAGCACCATCGCCAAGGTCGCGCGC
AACCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGAACAGGGCGC
CCGCTCCGCCGGCCCCTTCGTCCCGGTGAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCACGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTCGAC
GAGGTCGCCGAACTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CGCCACCGAGGTGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGACTGGCCAAGAGCCACGGCCGGCCCACCCCGCTGCTGTCGCCCTCCGCGCTGGA
CGCCCTGAGCAGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAGCGCGCCCTGGCGATGGCCGAGG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCGCAACCCGGCAACCACGCCCGCAGCGCCGCCGAAGCCGCCCCGGCC
CTGCCGCGCGGCGTGGTCGACATCGACCCCAGCTCCTCCGCCCTGCCGTCCTACATCGAGCAACTCGAACGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGTTGGGCATCACCTTTCGCGCGCTGCGCT
ACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.609

99.567

0.623
  pilR Acinetobacter baumannii strain A118

47.084

100

0.472