Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LPT20_RS13520 Genome accession   NZ_CP099504
Coordinates   2750698..2751384 (+) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain S36     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2745698..2756384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT20_RS13485 (LPT20_13485) yqeH 2746225..2747325 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  LPT20_RS13490 (LPT20_13490) aroE 2747339..2748145 (+) 807 WP_000666767.1 shikimate dehydrogenase -
  LPT20_RS13495 (LPT20_13495) yhbY 2748149..2748439 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  LPT20_RS13500 (LPT20_13500) nadD 2748442..2749011 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LPT20_RS13505 (LPT20_13505) yqeK 2749001..2749585 (+) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LPT20_RS13510 (LPT20_13510) rsfS 2749586..2749939 (+) 354 WP_001088020.1 ribosome silencing factor -
  LPT20_RS13515 (LPT20_13515) - 2749942..2750658 (+) 717 WP_000942456.1 class I SAM-dependent methyltransferase -
  LPT20_RS13520 (LPT20_13520) comEA 2750698..2751384 (+) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  LPT20_RS13525 (LPT20_13525) - 2751476..2751937 (+) 462 WP_000439693.1 ComE operon protein 2 -
  LPT20_RS13530 (LPT20_13530) comEC 2751942..2754143 (+) 2202 WP_000967504.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LPT20_RS13535 (LPT20_13535) holA 2754200..2755174 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  LPT20_RS13540 (LPT20_13540) rpsT 2755219..2755470 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=700207 LPT20_RS13520 WP_078055782.1 2750698..2751384(+) (comEA) [Staphylococcus aureus strain S36]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=700207 LPT20_RS13520 WP_078055782.1 2750698..2751384(+) (comEA) [Staphylococcus aureus strain S36]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982