Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   LPT20_RS02560 Genome accession   NZ_CP099504
Coordinates   550448..551017 (+) Length   189 a.a.
NCBI ID   WP_000287265.1    Uniprot ID   A0A7U7EXU5
Organism   Staphylococcus aureus strain S36     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 545448..556017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT20_RS02530 (LPT20_02530) - 545565..545684 (-) 120 WP_228766517.1 hypothetical protein -
  LPT20_RS02535 (LPT20_02535) - 545919..547565 (-) 1647 WP_057504515.1 IS1182-like element ISSau3 family transposase -
  LPT20_RS02540 (LPT20_02540) - 547961..548563 (-) 603 WP_001033867.1 CPBP family glutamic-type intramembrane protease -
  LPT20_RS02545 (LPT20_02545) - 548578..548754 (-) 177 WP_000214898.1 YkvS family protein -
  LPT20_RS02550 (LPT20_02550) - 548953..549939 (+) 987 WP_000668820.1 lipoate--protein ligase -
  LPT20_RS02555 (LPT20_02555) - 550020..550238 (-) 219 WP_000876826.1 IDEAL domain-containing protein -
  LPT20_RS02560 (LPT20_02560) comK/comK1 550448..551017 (+) 570 WP_000287265.1 competence protein ComK Regulator
  LPT20_RS02575 (LPT20_02575) - 551506..553017 (-) 1512 WP_000414178.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  LPT20_RS02580 (LPT20_02580) - 553156..554514 (-) 1359 WP_000021872.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22601.83 Da        Isoelectric Point: 9.6091

>NTDB_id=700180 LPT20_RS02560 WP_000287265.1 550448..551017(+) (comK/comK1) [Staphylococcus aureus strain S36]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=700180 LPT20_RS02560 WP_000287265.1 550448..551017(+) (comK/comK1) [Staphylococcus aureus strain S36]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGCGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATCACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTATATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

100

100

1
  comK/comK1 Staphylococcus aureus N315

100

100

1