Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LpgJCM5343_RS00040 | Genome accession | NZ_AP018549 |
| Coordinates | 9320..9838 (+) | Length | 172 a.a. |
| NCBI ID | WP_003648134.1 | Uniprot ID | A0A133PDF0 |
| Organism | Lactobacillus paragasseri strain JCM 5343 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4320..14838
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LpgJCM5343_RS00025 (LpgJCM5343_00050) | gyrB | 4336..6303 (+) | 1968 | WP_113576203.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| LpgJCM5343_RS00030 (LpgJCM5343_00060) | gyrA | 6314..8803 (+) | 2490 | WP_003649729.1 | DNA gyrase subunit A | - |
| LpgJCM5343_RS00035 (LpgJCM5343_00070) | rpsF | 8990..9286 (+) | 297 | WP_003648136.1 | 30S ribosomal protein S6 | - |
| LpgJCM5343_RS00040 (LpgJCM5343_00080) | ssb | 9320..9838 (+) | 519 | WP_003648134.1 | single-stranded DNA-binding protein | Machinery gene |
| LpgJCM5343_RS00045 (LpgJCM5343_00090) | rpsR | 9863..10099 (+) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| LpgJCM5343_RS00050 (LpgJCM5343_00100) | - | 10194..11111 (+) | 918 | WP_101891007.1 | magnesium transporter CorA family protein | - |
| LpgJCM5343_RS00055 (LpgJCM5343_00110) | - | 11217..13235 (+) | 2019 | WP_077959281.1 | DHH family phosphoesterase | - |
| LpgJCM5343_RS00060 (LpgJCM5343_00120) | rplI | 13247..13702 (+) | 456 | WP_077959282.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18499.16 Da Isoelectric Point: 4.7531
>NTDB_id=70016 LpgJCM5343_RS00040 WP_003648134.1 9320..9838(+) (ssb) [Lactobacillus paragasseri strain JCM 5343]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFVSCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSTNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFVSCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSTNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=70016 LpgJCM5343_RS00040 WP_003648134.1 9320..9838(+) (ssb) [Lactobacillus paragasseri strain JCM 5343]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCGTCAGCTGTGTAATTT
GGCGTAAAGCCGCAGAGAATTTTGCTAACTTTACTTCAAAGGGTTCACTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTATGATGATAAAGATGGTAAGAGAGTCTACGTGACTGAAGTCATCGTTGATAATTTCTCTTTATTAGAATCACGTCG
TGACCGTGAGAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCACTAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAGGATCCATTTGCAGATTCAGGT
AGCACTATTGATATTTCGGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCGTCAGCTGTGTAATTT
GGCGTAAAGCCGCAGAGAATTTTGCTAACTTTACTTCAAAGGGTTCACTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTATGATGATAAAGATGGTAAGAGAGTCTACGTGACTGAAGTCATCGTTGATAATTTCTCTTTATTAGAATCACGTCG
TGACCGTGAGAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCACTAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAGGATCCATTTGCAGATTCAGGT
AGCACTATTGATATTTCGGATGATGATCTCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.494 |
100 |
0.622 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.432 |
100 |
0.506 |