Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LPT17_RS02030 Genome accession   NZ_CP099502
Coordinates   376129..376815 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JL42     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371129..381815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT17_RS01995 (LPT17_01995) yqeH 371656..372756 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  LPT17_RS02000 (LPT17_02000) aroE 372770..373576 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  LPT17_RS02005 (LPT17_02005) yhbY 373580..373870 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  LPT17_RS02010 (LPT17_02010) nadD 373873..374442 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LPT17_RS02015 (LPT17_02015) yqeK 374432..375016 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LPT17_RS02020 (LPT17_02020) rsfS 375017..375370 (+) 354 WP_001088020.1 ribosome silencing factor -
  LPT17_RS02025 (LPT17_02025) - 375373..376089 (+) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  LPT17_RS02030 (LPT17_02030) comEA 376129..376815 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  LPT17_RS02035 (LPT17_02035) - 376907..377368 (+) 462 WP_000439690.1 ComE operon protein 2 -
  LPT17_RS02040 (LPT17_02040) comEC 377373..379574 (+) 2202 WP_229353502.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LPT17_RS02045 (LPT17_02045) holA 379631..380605 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  LPT17_RS02050 (LPT17_02050) rpsT 380650..380901 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=700140 LPT17_RS02030 WP_001825349.1 376129..376815(+) (comEA) [Staphylococcus aureus strain JL42]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=700140 LPT17_RS02030 WP_001825349.1 376129..376815(+) (comEA) [Staphylococcus aureus strain JL42]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961