Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LPT19_RS06125 Genome accession   NZ_CP099499
Coordinates   1267622..1268308 (-) Length   228 a.a.
NCBI ID   WP_229360417.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0610-H-2A     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1262622..1273308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT19_RS06105 (LPT19_06105) rpsT 1263536..1263787 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  LPT19_RS06110 (LPT19_06110) holA 1263832..1264806 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  LPT19_RS06115 (LPT19_06115) comEC 1264863..1267064 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LPT19_RS06120 (LPT19_06120) - 1267069..1267530 (-) 462 WP_000439690.1 ComE operon protein 2 -
  LPT19_RS06125 (LPT19_06125) comEA 1267622..1268308 (-) 687 WP_229360417.1 ComEA family DNA-binding protein Machinery gene
  LPT19_RS06130 (LPT19_06130) - 1268348..1269064 (-) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  LPT19_RS06135 (LPT19_06135) rsfS 1269067..1269420 (-) 354 WP_001088020.1 ribosome silencing factor -
  LPT19_RS06140 (LPT19_06140) yqeK 1269421..1270005 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LPT19_RS06145 (LPT19_06145) nadD 1269995..1270564 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LPT19_RS06150 (LPT19_06150) yhbY 1270567..1270857 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  LPT19_RS06155 (LPT19_06155) aroE 1270861..1271667 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  LPT19_RS06160 (LPT19_06160) yqeH 1271681..1272781 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25811.46 Da        Isoelectric Point: 9.3305

>NTDB_id=700113 LPT19_RS06125 WP_229360417.1 1267622..1268308(-) (comEA) [Staphylococcus aureus strain 0610-H-2A]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKVQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=700113 LPT19_RS06125 WP_229360417.1 1267622..1268308(-) (comEA) [Staphylococcus aureus strain 0610-H-2A]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGTACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.035

99.561

0.956
  comEA Staphylococcus aureus N315

96.035

99.561

0.956