Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LPT16_RS12755 Genome accession   NZ_CP099495
Coordinates   2608154..2608549 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JL28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2603154..2613549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT16_RS12730 (LPT16_12730) - 2604323..2604727 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LPT16_RS12735 (LPT16_12735) - 2605380..2605613 (+) 234 WP_000384523.1 DUF1146 family protein -
  LPT16_RS12740 (LPT16_12740) murA 2605724..2606989 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LPT16_RS12745 (LPT16_12745) fabZ 2607023..2607463 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LPT16_RS12750 (LPT16_12750) - 2607520..2607960 (-) 441 WP_000846746.1 YwpF-like family protein -
  LPT16_RS12755 (LPT16_12755) ssb 2608154..2608549 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LPT16_RS12760 (LPT16_12760) sceD 2608938..2609633 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  LPT16_RS12765 (LPT16_12765) tenA 2610020..2610709 (+) 690 WP_000396068.1 thiaminase II -
  LPT16_RS12770 (LPT16_12770) thiD 2610702..2611532 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LPT16_RS12775 (LPT16_12775) thiM 2611516..2612307 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  LPT16_RS12780 (LPT16_12780) thiE 2612309..2612950 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=700042 LPT16_RS12755 WP_000932694.1 2608154..2608549(+) (ssb) [Staphylococcus aureus strain JL28]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=700042 LPT16_RS12755 WP_000932694.1 2608154..2608549(+) (ssb) [Staphylococcus aureus strain JL28]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992