Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   LPT16_RS04950 Genome accession   NZ_CP099495
Coordinates   997367..997936 (+) Length   189 a.a.
NCBI ID   WP_096002271.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JL28     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 992367..1002936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT16_RS04925 (LPT16_04925) - 993584..993868 (-) 285 WP_000790905.1 lactococcin 972 family bacteriocin -
  LPT16_RS13565 - 994522..994629 (-) 108 WP_001825523.1 hypothetical protein -
  LPT16_RS04930 (LPT16_04930) - 994880..995482 (-) 603 WP_001033867.1 CPBP family glutamic-type intramembrane protease -
  LPT16_RS04935 (LPT16_04935) - 995497..995673 (-) 177 WP_000214898.1 YkvS family protein -
  LPT16_RS04940 (LPT16_04940) - 995872..996858 (+) 987 WP_000668814.1 lipoate--protein ligase -
  LPT16_RS04945 (LPT16_04945) - 996939..997157 (-) 219 WP_000876826.1 IDEAL domain-containing protein -
  LPT16_RS04950 (LPT16_04950) comK/comK1 997367..997936 (+) 570 WP_096002271.1 competence protein ComK Regulator
  LPT16_RS04965 (LPT16_04965) - 998425..999936 (-) 1512 WP_000414168.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  LPT16_RS04970 (LPT16_04970) - 1000075..1001433 (-) 1359 WP_000021872.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22619.86 Da        Isoelectric Point: 9.6091

>NTDB_id=700024 LPT16_RS04950 WP_096002271.1 997367..997936(+) (comK/comK1) [Staphylococcus aureus strain JL28]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATMNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=700024 LPT16_RS04950 WP_096002271.1 997367..997936(+) (comK/comK1) [Staphylococcus aureus strain JL28]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATCAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACAATGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995