Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NC516_RS05435 Genome accession   NZ_CP099485
Coordinates   1074492..1075358 (-) Length   288 a.a.
NCBI ID   WP_035145813.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0095     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1069492..1080358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS05420 (NC516_05420) topA 1070728..1072812 (-) 2085 WP_016265142.1 type I DNA topoisomerase -
  NC516_RS05425 (NC516_05425) - 1073062..1073496 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  NC516_RS05430 (NC516_05430) - 1073525..1074391 (-) 867 WP_035145810.1 NAD(P)H-binding protein -
  NC516_RS05435 (NC516_05435) dprA 1074492..1075358 (-) 867 WP_035145813.1 DNA-processing protein DprA Machinery gene
  NC516_RS05440 (NC516_05440) - 1075413..1076174 (-) 762 WP_035145815.1 ribonuclease HII -
  NC516_RS05445 (NC516_05445) ylqF 1076176..1077027 (-) 852 WP_162926712.1 ribosome biogenesis GTPase YlqF -
  NC516_RS05450 (NC516_05450) lepB 1077159..1077689 (-) 531 WP_035145820.1 signal peptidase I -
  NC516_RS05455 (NC516_05455) - 1077714..1077938 (-) 225 WP_016265150.1 YozE family protein -
  NC516_RS05460 (NC516_05460) - 1077949..1078578 (-) 630 WP_011374699.1 YpmS family protein -
  NC516_RS05465 (NC516_05465) - 1078591..1079493 (-) 903 WP_016265151.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31845.80 Da        Isoelectric Point: 8.5887

>NTDB_id=699967 NC516_RS05435 WP_035145813.1 1074492..1075358(-) (dprA) [Latilactobacillus sakei strain WiKim0095]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWTLSALEIAQIARLPERYWPTFQASFQSTDLQRQCIDHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=699967 NC516_RS05435 WP_035145813.1 1074492..1075358(-) (dprA) [Latilactobacillus sakei strain WiKim0095]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGACGTTATCGGCGTTAGAAATTGCACAAATTGCGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCGAGTTTTCAAAGTACGGACCTACAACGCCAATGCATCGACCATGAAGTTCGAACGACTTATTTAACG
ATTTTAGATAAAGACTACCCTCAACGCTTATTGGAAACCTATTTGCCACCTGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAGCAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGGGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGCTTGTTACTATCTGAATACGCTCTCGGTACACCAGCCCGGCGTTATCAATTTCCAGCCCGGAATA
AAATCATTGCGGGGTTATGTCATAGCTTAATTGTGACGGAGGCCCGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTTTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGTGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.611

100

0.986
  dprA Legionella pneumophila strain ERS1305867

37.5

100

0.375