Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | M5C72_RS06190 | Genome accession | NZ_CP099481 |
| Coordinates | 1236384..1236926 (+) | Length | 180 a.a. |
| NCBI ID | WP_076616433.1 | Uniprot ID | A0A1P8Q4E0 |
| Organism | Companilactobacillus allii strain WiKim39 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1219565..1270057 | 1236384..1236926 | within | 0 |
Gene organization within MGE regions
Location: 1219565..1270057
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5C72_RS06080 (M5C72_06080) | - | 1219565..1220704 (-) | 1140 | WP_076616378.1 | AI-2E family transporter | - |
| M5C72_RS06085 (M5C72_06085) | galE | 1220821..1221810 (-) | 990 | WP_076616381.1 | UDP-glucose 4-epimerase GalE | - |
| M5C72_RS06090 (M5C72_06090) | - | 1221965..1222627 (+) | 663 | WP_076616384.1 | class A sortase | - |
| M5C72_RS06095 (M5C72_06095) | recJ | 1222693..1224999 (+) | 2307 | WP_076616387.1 | single-stranded-DNA-specific exonuclease RecJ | - |
| M5C72_RS06100 (M5C72_06100) | - | 1225021..1225539 (+) | 519 | WP_076616390.1 | adenine phosphoribosyltransferase | - |
| M5C72_RS06110 (M5C72_06110) | - | 1225787..1226908 (-) | 1122 | WP_076616394.1 | site-specific integrase | - |
| M5C72_RS06115 (M5C72_06115) | - | 1227050..1227901 (-) | 852 | WP_076616397.1 | SHOCT domain-containing protein | - |
| M5C72_RS06120 (M5C72_06120) | - | 1227958..1228368 (-) | 411 | WP_076618862.1 | ImmA/IrrE family metallo-endopeptidase | - |
| M5C72_RS06125 (M5C72_06125) | - | 1228389..1229342 (-) | 954 | WP_076616400.1 | minor capsid protein | - |
| M5C72_RS06130 (M5C72_06130) | - | 1229332..1229676 (-) | 345 | WP_076616403.1 | helix-turn-helix domain-containing protein | - |
| M5C72_RS06135 (M5C72_06135) | - | 1229934..1230143 (+) | 210 | WP_076616406.1 | helix-turn-helix transcriptional regulator | - |
| M5C72_RS06140 (M5C72_06140) | - | 1230154..1230942 (+) | 789 | WP_076616408.1 | phage antirepressor | - |
| M5C72_RS06145 (M5C72_06145) | - | 1230946..1231278 (+) | 333 | WP_076616411.1 | DUF771 domain-containing protein | - |
| M5C72_RS06150 (M5C72_06150) | - | 1231272..1231445 (+) | 174 | WP_157886447.1 | hypothetical protein | - |
| M5C72_RS06155 (M5C72_06155) | - | 1231585..1232091 (-) | 507 | WP_076616414.1 | hypothetical protein | - |
| M5C72_RS06160 (M5C72_06160) | - | 1232379..1233290 (+) | 912 | WP_076616420.1 | DUF1351 domain-containing protein | - |
| M5C72_RS06165 (M5C72_06165) | - | 1233287..1233931 (+) | 645 | WP_076616424.1 | ERF family protein | - |
| M5C72_RS06170 (M5C72_06170) | - | 1233943..1234599 (+) | 657 | WP_083685969.1 | putative HNHc nuclease | - |
| M5C72_RS06175 (M5C72_06175) | - | 1234602..1235330 (+) | 729 | WP_076616426.1 | helix-turn-helix domain-containing protein | - |
| M5C72_RS06180 (M5C72_06180) | - | 1235355..1236116 (+) | 762 | WP_225972247.1 | AAA family ATPase | - |
| M5C72_RS06185 (M5C72_06185) | - | 1236119..1236394 (+) | 276 | WP_076616431.1 | hypothetical protein | - |
| M5C72_RS06190 (M5C72_06190) | ssb | 1236384..1236926 (+) | 543 | WP_076616433.1 | single-stranded DNA-binding protein | Machinery gene |
| M5C72_RS06195 (M5C72_06195) | - | 1236944..1237384 (+) | 441 | WP_076616435.1 | replication terminator protein | - |
| M5C72_RS06200 (M5C72_06200) | - | 1237398..1237583 (+) | 186 | WP_076616438.1 | hypothetical protein | - |
| M5C72_RS06205 (M5C72_06205) | - | 1237595..1237810 (+) | 216 | WP_076616442.1 | hypothetical protein | - |
| M5C72_RS06210 (M5C72_06210) | - | 1237803..1238021 (+) | 219 | WP_076616445.1 | hypothetical protein | - |
| M5C72_RS06215 (M5C72_06215) | - | 1238063..1238470 (+) | 408 | WP_225972195.1 | transcriptional regulator | - |
| M5C72_RS06220 (M5C72_06220) | - | 1238669..1239346 (+) | 678 | WP_076616454.1 | hypothetical protein | - |
| M5C72_RS06225 (M5C72_06225) | - | 1239374..1240156 (+) | 783 | WP_076616457.1 | terminase small subunit | - |
| M5C72_RS06230 (M5C72_06230) | - | 1240137..1241396 (+) | 1260 | WP_076616461.1 | phage terminase large subunit | - |
| M5C72_RS06235 (M5C72_06235) | - | 1241387..1242799 (+) | 1413 | WP_076616464.1 | phage portal protein | - |
| M5C72_RS06240 (M5C72_06240) | - | 1242786..1244822 (+) | 2037 | WP_076616466.1 | minor capsid protein | - |
| M5C72_RS06245 (M5C72_06245) | - | 1244815..1244973 (+) | 159 | WP_164510771.1 | hypothetical protein | - |
| M5C72_RS06250 (M5C72_06250) | - | 1245101..1245652 (+) | 552 | WP_076616469.1 | phage scaffolding protein | - |
| M5C72_RS06255 (M5C72_06255) | - | 1245668..1246582 (+) | 915 | WP_076616471.1 | capsid protein | - |
| M5C72_RS06260 (M5C72_06260) | - | 1246658..1247113 (+) | 456 | WP_076616474.1 | Ig-like domain-containing protein | - |
| M5C72_RS06265 (M5C72_06265) | - | 1247123..1247512 (+) | 390 | WP_076616476.1 | hypothetical protein | - |
| M5C72_RS06270 (M5C72_06270) | - | 1247530..1247886 (+) | 357 | WP_076618867.1 | hypothetical protein | - |
| M5C72_RS06275 (M5C72_06275) | - | 1247887..1248309 (+) | 423 | WP_076616479.1 | HK97 gp10 family phage protein | - |
| M5C72_RS06280 (M5C72_06280) | - | 1248306..1248713 (+) | 408 | WP_076616482.1 | DUF6838 family protein | - |
| M5C72_RS06285 (M5C72_06285) | - | 1248703..1248858 (+) | 156 | WP_157886448.1 | hypothetical protein | - |
| M5C72_RS06290 (M5C72_06290) | - | 1248858..1250276 (+) | 1419 | WP_076616485.1 | phage tail sheath family protein | - |
| M5C72_RS06295 (M5C72_06295) | - | 1250292..1250777 (+) | 486 | WP_076616488.1 | phage tail tube protein | - |
| M5C72_RS06300 (M5C72_06300) | - | 1250820..1251209 (+) | 390 | WP_076616491.1 | hypothetical protein | - |
| M5C72_RS06305 (M5C72_06305) | - | 1251254..1251403 (+) | 150 | WP_164510772.1 | hypothetical protein | - |
| M5C72_RS06310 (M5C72_06310) | - | 1251440..1254559 (+) | 3120 | WP_076616494.1 | tape measure protein | - |
| M5C72_RS06315 (M5C72_06315) | - | 1254570..1255256 (+) | 687 | WP_076616498.1 | hypothetical protein | - |
| M5C72_RS06320 (M5C72_06320) | - | 1255253..1256305 (+) | 1053 | WP_076616501.1 | hypothetical protein | - |
| M5C72_RS06325 (M5C72_06325) | - | 1256278..1256646 (+) | 369 | WP_076616504.1 | DUF2577 domain-containing protein | - |
| M5C72_RS06330 (M5C72_06330) | - | 1256639..1256998 (+) | 360 | WP_076616507.1 | DUF2634 domain-containing protein | - |
| M5C72_RS06335 (M5C72_06335) | - | 1256988..1258136 (+) | 1149 | WP_076616509.1 | baseplate J/gp47 family protein | - |
| M5C72_RS06340 (M5C72_06340) | - | 1258129..1258923 (+) | 795 | WP_076616512.1 | putative phage tail protein | - |
| M5C72_RS06345 (M5C72_06345) | - | 1258924..1259508 (+) | 585 | WP_076616515.1 | phage tail protein | - |
| M5C72_RS06350 (M5C72_06350) | - | 1259511..1259786 (+) | 276 | WP_076616518.1 | hypothetical protein | - |
| M5C72_RS06355 (M5C72_06355) | - | 1259800..1261029 (+) | 1230 | WP_076616521.1 | hypothetical protein | - |
| M5C72_RS06360 (M5C72_06360) | - | 1261042..1261383 (+) | 342 | WP_076616523.1 | hypothetical protein | - |
| M5C72_RS06365 (M5C72_06365) | - | 1261383..1261517 (+) | 135 | WP_083685972.1 | XkdX family protein | - |
| M5C72_RS06370 (M5C72_06370) | - | 1261554..1261940 (+) | 387 | WP_083685973.1 | hypothetical protein | - |
| M5C72_RS06375 (M5C72_06375) | - | 1261933..1262226 (+) | 294 | WP_076616526.1 | hypothetical protein | - |
| M5C72_RS06380 (M5C72_06380) | - | 1262227..1262517 (+) | 291 | WP_076616530.1 | holin | - |
| M5C72_RS06385 (M5C72_06385) | - | 1262514..1263635 (+) | 1122 | WP_076616533.1 | GH25 family lysozyme | - |
| M5C72_RS06390 (M5C72_06390) | relB | 1264098..1264316 (-) | 219 | WP_076616536.1 | type II toxin-antitoxin system RelB family antitoxin | - |
| M5C72_RS06395 (M5C72_06395) | - | 1264533..1264985 (+) | 453 | WP_076616540.1 | MarR family transcriptional regulator | - |
| M5C72_RS06400 (M5C72_06400) | - | 1265004..1265525 (+) | 522 | WP_076616543.1 | GNAT family N-acetyltransferase | - |
| M5C72_RS06405 (M5C72_06405) | map | 1265629..1266414 (+) | 786 | WP_076616547.1 | type I methionyl aminopeptidase | - |
| M5C72_RS06410 (M5C72_06410) | - | 1266480..1267100 (-) | 621 | WP_083685974.1 | hypothetical protein | - |
| M5C72_RS06415 (M5C72_06415) | - | 1267141..1267653 (-) | 513 | WP_076616550.1 | SLAP domain-containing protein | - |
| M5C72_RS06420 (M5C72_06420) | - | 1268039..1268464 (+) | 426 | WP_076616554.1 | universal stress protein | - |
| M5C72_RS06425 (M5C72_06425) | - | 1268485..1268793 (-) | 309 | WP_076616557.1 | hypothetical protein | - |
| M5C72_RS06430 (M5C72_06430) | - | 1268862..1269386 (-) | 525 | WP_076616561.1 | phosphatidylglycerophosphatase A | - |
| M5C72_RS06435 (M5C72_06435) | - | 1269401..1270057 (-) | 657 | WP_076616564.1 | HD domain-containing protein | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 20362.95 Da Isoelectric Point: 5.8919
>NTDB_id=699940 M5C72_RS06190 WP_076616433.1 1236384..1236926(+) (ssb) [Companilactobacillus allii strain WiKim39]
MLNKCVLVGRLTKDVELRYTNNNDAAANFIIAVNRNFKNAQGEREADFINCVIWRKAAEIFSKYTHKGSLVAIDGRIQTR
TYDNNQGQTVYVTELLVDEFSFLDSNNSDSNQSNNNNSQQRFNRNNSQNSNNYQNNNQSQFGNNSPFENGRQNNNAGNGM
NDPYKSNNGGINVSDDQLPF
MLNKCVLVGRLTKDVELRYTNNNDAAANFIIAVNRNFKNAQGEREADFINCVIWRKAAEIFSKYTHKGSLVAIDGRIQTR
TYDNNQGQTVYVTELLVDEFSFLDSNNSDSNQSNNNNSQQRFNRNNSQNSNNYQNNNQSQFGNNSPFENGRQNNNAGNGM
NDPYKSNNGGINVSDDQLPF
Nucleotide
Download Length: 543 bp
>NTDB_id=699940 M5C72_RS06190 WP_076616433.1 1236384..1236926(+) (ssb) [Companilactobacillus allii strain WiKim39]
ATGCTGAATAAGTGTGTTTTAGTCGGACGATTAACTAAGGATGTTGAACTTAGATACACGAATAACAATGATGCTGCAGC
AAATTTTATAATTGCGGTTAATCGAAACTTTAAGAATGCTCAAGGTGAACGTGAGGCAGATTTTATTAACTGTGTTATTT
GGAGGAAAGCAGCTGAAATATTCAGTAAATATACTCACAAGGGTTCATTAGTGGCAATTGATGGTAGGATTCAAACACGA
ACTTACGATAATAATCAAGGTCAGACTGTTTATGTTACCGAGTTGCTCGTAGATGAGTTTTCATTTTTGGATTCAAATAA
TTCTGATAGTAACCAATCTAATAATAATAACAGCCAACAAAGATTTAATCGTAATAATTCTCAAAATAGCAATAATTACC
AAAATAATAATCAATCGCAATTTGGGAATAATAGTCCATTTGAAAATGGTCGTCAGAACAATAATGCTGGTAATGGTATG
AATGATCCATATAAATCAAATAATGGTGGGATAAATGTCAGCGATGATCAGTTGCCATTTTAA
ATGCTGAATAAGTGTGTTTTAGTCGGACGATTAACTAAGGATGTTGAACTTAGATACACGAATAACAATGATGCTGCAGC
AAATTTTATAATTGCGGTTAATCGAAACTTTAAGAATGCTCAAGGTGAACGTGAGGCAGATTTTATTAACTGTGTTATTT
GGAGGAAAGCAGCTGAAATATTCAGTAAATATACTCACAAGGGTTCATTAGTGGCAATTGATGGTAGGATTCAAACACGA
ACTTACGATAATAATCAAGGTCAGACTGTTTATGTTACCGAGTTGCTCGTAGATGAGTTTTCATTTTTGGATTCAAATAA
TTCTGATAGTAACCAATCTAATAATAATAACAGCCAACAAAGATTTAATCGTAATAATTCTCAAAATAGCAATAATTACC
AAAATAATAATCAATCGCAATTTGGGAATAATAGTCCATTTGAAAATGGTCGTCAGAACAATAATGCTGGTAATGGTATG
AATGATCCATATAAATCAAATAATGGTGGGATAAATGTCAGCGATGATCAGTTGCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.222 |
100 |
0.522 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.283 |
100 |
0.483 |