Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M5C72_RS00040 Genome accession   NZ_CP099481
Coordinates   9308..9892 (+) Length   194 a.a.
NCBI ID   WP_076614089.1    Uniprot ID   A0A1P8Q178
Organism   Companilactobacillus allii strain WiKim39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4308..14892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C72_RS00030 (M5C72_00030) gyrA 6231..8780 (+) 2550 WP_076614087.1 DNA gyrase subunit A -
  M5C72_RS00035 (M5C72_00035) rpsF 8981..9271 (+) 291 WP_252618796.1 30S ribosomal protein S6 -
  M5C72_RS00040 (M5C72_00040) ssb 9308..9892 (+) 585 WP_076614089.1 single-stranded DNA-binding protein Machinery gene
  M5C72_RS00045 (M5C72_00045) rpsR 9912..10148 (+) 237 WP_076614090.1 30S ribosomal protein S18 -
  M5C72_RS00050 (M5C72_00050) - 10293..12302 (+) 2010 WP_076614091.1 DHH family phosphoesterase -
  M5C72_RS00055 (M5C72_00055) rplI 12348..12803 (+) 456 WP_076614092.1 50S ribosomal protein L9 -
  M5C72_RS00060 (M5C72_00060) dnaB 12810..14189 (+) 1380 WP_076614093.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21590.95 Da        Isoelectric Point: 4.7719

>NTDB_id=699927 M5C72_RS00040 WP_076614089.1 9308..9892(+) (ssb) [Companilactobacillus allii strain WiKim39]
MINRVVLTGRLTRDPELRYTSSGAAVASFTVAVNRTFTNAQGEREADFINCVIWRKSAENFSNFTNKGSLVGIDGRLQTR
SYENQQGQRVYVTEVVVENFSLLESRSESEKRNTGSSNNNFGDNNKSNNSNPNQAPYNNQQNQSSQSPFGNNNSNNNNNQ
SNNNNNNSNNSNNMSDPFADNSKPIDISDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=699927 M5C72_RS00040 WP_076614089.1 9308..9892(+) (ssb) [Companilactobacillus allii strain WiKim39]
ATGATTAATCGAGTTGTATTAACTGGACGCCTGACACGTGATCCTGAACTAAGATACACGTCTAGCGGGGCTGCCGTTGC
TAGTTTTACAGTAGCAGTAAATAGAACATTTACTAATGCTCAAGGGGAACGTGAGGCTGATTTTATCAACTGCGTTATCT
GGAGAAAATCTGCTGAGAACTTTTCAAATTTCACTAATAAGGGTTCACTTGTTGGAATAGATGGACGTCTTCAAACACGT
TCATATGAAAATCAACAAGGTCAAAGAGTCTATGTAACCGAAGTTGTTGTTGAAAACTTCTCATTGCTAGAATCAAGATC
CGAAAGTGAGAAGAGAAATACTGGTTCATCAAATAATAATTTTGGTGATAACAATAAGAGCAACAACAGTAATCCCAATC
AAGCTCCATATAATAATCAACAAAATCAATCAAGCCAGTCGCCTTTTGGCAACAACAATTCAAATAATAACAATAATCAA
TCTAACAACAATAATAACAACAGTAACAACTCAAATAATATGAGCGATCCATTTGCTGACAACAGTAAACCAATCGACAT
ATCAGATGACGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8Q178

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.856

100

0.619
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.051

100

0.562