Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinI   Type   Regulator
Locus tag   NF199_RS11700 Genome accession   NZ_CP099460
Coordinates   2435290..2435463 (+) Length   57 a.a.
NCBI ID   WP_032874029.1    Uniprot ID   -
Organism   Bacillus velezensis strain E     
Function   inhibit the expression of sinR (predicted from homology)   
Competence regulation

Genomic Context

Location: 2430290..2440463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF199_RS11685 gcvT 2431104..2432204 (-) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -
  NF199_RS11690 - 2432627..2434297 (+) 1671 WP_032874031.1 DEAD/DEAH box helicase -
  NF199_RS11695 - 2434319..2435113 (+) 795 WP_007612541.1 YqhG family protein -
  NF199_RS11700 sinI 2435290..2435463 (+) 174 WP_032874029.1 anti-repressor SinI Regulator
  NF199_RS11705 sinR 2435497..2435832 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  NF199_RS11710 tasA 2435880..2436665 (-) 786 WP_032874027.1 biofilm matrix protein TasA -
  NF199_RS11715 sipW 2436730..2437314 (-) 585 WP_032874025.1 signal peptidase I SipW -
  NF199_RS11720 tapA 2437286..2437957 (-) 672 WP_265605828.1 amyloid fiber anchoring/assembly protein TapA -
  NF199_RS11725 - 2438216..2438545 (+) 330 WP_032874021.1 DUF3889 domain-containing protein -
  NF199_RS11730 - 2438586..2438765 (-) 180 WP_022552966.1 YqzE family protein -
  NF199_RS11735 comGG 2438822..2439199 (-) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  NF199_RS11740 comGF 2439200..2439664 (-) 465 WP_223813077.1 competence type IV pilus minor pilin ComGF -
  NF199_RS11745 comGE 2439609..2439923 (-) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  NF199_RS11750 comGD 2439907..2440344 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene

Sequence

Protein


Download         Length: 57 a.a.        Molecular weight: 6658.66 Da        Isoelectric Point: 9.8168

>NTDB_id=699784 NF199_RS11700 WP_032874029.1 2435290..2435463(+) (sinI) [Bacillus velezensis strain E]
MKNAKMEFSQLDKEWVELILEAQKANISLEEIRKYLLSNKKSSQHVQAARSHTVNPF

Nucleotide


Download         Length: 174 bp        

>NTDB_id=699784 NF199_RS11700 WP_032874029.1 2435290..2435463(+) (sinI) [Bacillus velezensis strain E]
ATGAAAAATGCAAAAATGGAATTTTCGCAATTAGATAAGGAATGGGTTGAGCTGATATTAGAAGCCCAAAAAGCAAATAT
CAGCCTAGAAGAAATACGCAAATACCTGCTTTCGAATAAAAAGTCTTCTCAACATGTCCAGGCAGCCAGAAGTCATACCG
TAAATCCTTTCTGA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(11-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinI Bacillus subtilis subsp. subtilis str. 168

71.93

100

0.719