Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PCP63_RS22400 Genome accession   NZ_CP115258
Coordinates   4865455..4866051 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain F028     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4860455..4871051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP63_RS22390 (PCP63_22380) - 4861735..4864206 (-) 2472 WP_043096086.1 penicillin-binding protein 1A -
  PCP63_RS22395 (PCP63_22385) pilM 4864391..4865455 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP63_RS22400 (PCP63_22390) pilN 4865455..4866051 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP63_RS22405 (PCP63_22395) pilO 4866048..4866671 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP63_RS22410 (PCP63_22400) comL/pilP 4866668..4867192 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP63_RS22415 (PCP63_22405) pilQ 4867246..4869390 (+) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  PCP63_RS22420 (PCP63_22410) aroK 4869402..4869920 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=699763 PCP63_RS22400 WP_003095839.1 4865455..4866051(+) (pilN) [Pseudomonas aeruginosa strain F028]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=699763 PCP63_RS22400 WP_003095839.1 4865455..4866051(+) (pilN) [Pseudomonas aeruginosa strain F028]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369