Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   PCP63_RS22405 Genome accession   NZ_CP115258
Coordinates   4866048..4866671 (+) Length   207 a.a.
NCBI ID   WP_003103268.1    Uniprot ID   G3XD51
Organism   Pseudomonas aeruginosa strain F028     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4861048..4871671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP63_RS22390 (PCP63_22380) - 4861735..4864206 (-) 2472 WP_043096086.1 penicillin-binding protein 1A -
  PCP63_RS22395 (PCP63_22385) pilM 4864391..4865455 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP63_RS22400 (PCP63_22390) pilN 4865455..4866051 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP63_RS22405 (PCP63_22395) pilO 4866048..4866671 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP63_RS22410 (PCP63_22400) comL/pilP 4866668..4867192 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP63_RS22415 (PCP63_22405) pilQ 4867246..4869390 (+) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  PCP63_RS22420 (PCP63_22410) aroK 4869402..4869920 (+) 519 WP_003095833.1 shikimate kinase AroK -
  PCP63_RS22425 (PCP63_22415) aroB 4869970..4871076 (+) 1107 WP_080911875.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22819.26 Da        Isoelectric Point: 4.7787

>NTDB_id=699764 PCP63_RS22405 WP_003103268.1 4866048..4866671(+) (pilO) [Pseudomonas aeruginosa strain F028]
MSLASSLESLRKIDINDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLSDMQAQLEQQAAEEETLKQQFSTKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPVAPGSTSKLRMSILAKTYRYNDKGLKK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=699764 PCP63_RS22405 WP_003103268.1 4866048..4866671(+) (pilO) [Pseudomonas aeruginosa strain F028]
ATGAGTCTGGCCAGTTCCCTGGAAAGTCTGCGCAAGATCGATATCAACGATCTCGACCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGCTACAACTTCCATCTGAGTGACA
TGCAGGCTCAGCTCGAACAGCAGGCCGCGGAAGAGGAGACGCTCAAGCAGCAGTTCTCCACCAAGGCCTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAGGAGATGGAAGAGTCCTTTGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGCCTGGGCAGCGGCCTGGAGTTCGAGGAAATCAAGCTGCTTC
CCGAGGTTGCCCAGCAGTTCTACATCGAGCTGCCGATCCAGATCAGCGTGGTCGGCGGCTACCACGACCTGGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTCACCCTGCATGACTTCGAGATCAAGCCGGTCGCGCCCGGCAGCACGTC
CAAGCTGCGCATGAGCATCCTGGCCAAGACCTATCGCTACAACGACAAGGGGCTGAAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XD51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

46.114

93.237

0.43
  pilO Acinetobacter baumannii D1279779

43.979

92.271

0.406
  comO/pilO Acinetobacter baylyi ADP1

43.455

92.271

0.401