Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NE411_RS13435 Genome accession   NZ_CP099450
Coordinates   2582985..2584724 (-) Length   579 a.a.
NCBI ID   WP_000947753.1    Uniprot ID   -
Organism   Bacillus pacificus strain ANSB901     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2577985..2589724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE411_RS13410 (NE411_13395) - 2579033..2579266 (+) 234 WP_001190192.1 DUF2627 domain-containing protein -
  NE411_RS13415 (NE411_13400) - 2579316..2580044 (-) 729 WP_000172557.1 glycerophosphodiester phosphodiesterase -
  NE411_RS13420 (NE411_13405) - 2580095..2580241 (+) 147 WP_001247671.1 YycC family protein -
  NE411_RS13425 (NE411_13410) spo0A 2580486..2581280 (-) 795 WP_014297988.1 sporulation transcription factor Spo0A Regulator
  NE411_RS13430 (NE411_13415) spoIVB 2581568..2582866 (-) 1299 WP_002028467.1 SpoIVB peptidase -
  NE411_RS13435 (NE411_13420) recN 2582985..2584724 (-) 1740 WP_000947753.1 DNA repair protein RecN Machinery gene
  NE411_RS13440 (NE411_13425) argR 2584992..2585441 (-) 450 WP_001032581.1 arginine repressor ArgR -
  NE411_RS13445 (NE411_13430) - 2585584..2586423 (-) 840 WP_001274742.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  NE411_RS13450 (NE411_13435) dxs 2586427..2588319 (-) 1893 WP_000366448.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NE411_RS13455 (NE411_13440) ispA 2588622..2589512 (-) 891 WP_000150362.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65812.90 Da        Isoelectric Point: 4.8266

>NTDB_id=699588 NE411_RS13435 WP_000947753.1 2582985..2584724(-) (recN) [Bacillus pacificus strain ANSB901]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHRFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=699588 NE411_RS13435 WP_000947753.1 2582985..2584724(-) (recN) [Bacillus pacificus strain ANSB901]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGGCTATTTTATGTGGAAGATGATAAGCATCCATGTATTGAAAAA
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGAAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGGCAACACG
AAACGCAAGACTTAATGAATGAAGAACGTCATTTATTTATGCTCGATCATTTTGATGGAGAGCGTATCGTTAAACAATTA
GATATATACCAAAACGTATATGCTGACTATGAGAAATTAAAAAAACAGTTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAAGCTGATTTAAAGATGGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAGATTTATAAAGCATTAGGTGACGCGTATCGCTCGTTAAGTGCT
GACGGACAAGGGTTAGATAATGTACGAAGCGCAATGGGACAGATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCCATTGCCAATAGTTATTATTTATTAGAAGAAGTTGCCTATCAACTAAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGCTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATCATG
AAGCGAGAAGGAAATGCAGAAGAGCCTCTCGTGGAGGGAGCACCGGTAAGACTTACAGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACAAATCCGGGTGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGAGGAGAGTTATCCCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAGATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCAAATGATCGAACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCGTTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601