Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NE411_RS13425 Genome accession   NZ_CP099450
Coordinates   2580486..2581280 (-) Length   264 a.a.
NCBI ID   WP_014297988.1    Uniprot ID   A0A1J9YJW5
Organism   Bacillus pacificus strain ANSB901     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2575486..2586280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE411_RS13400 (NE411_13385) yqiS 2575729..2576628 (-) 900 WP_000763072.1 phosphate butyryltransferase -
  NE411_RS13405 (NE411_13390) - 2576824..2578896 (-) 2073 WP_000811009.1 sigma-54 interaction domain-containing protein -
  NE411_RS13410 (NE411_13395) - 2579033..2579266 (+) 234 WP_001190192.1 DUF2627 domain-containing protein -
  NE411_RS13415 (NE411_13400) - 2579316..2580044 (-) 729 WP_000172557.1 glycerophosphodiester phosphodiesterase -
  NE411_RS13420 (NE411_13405) - 2580095..2580241 (+) 147 WP_001247671.1 YycC family protein -
  NE411_RS13425 (NE411_13410) spo0A 2580486..2581280 (-) 795 WP_014297988.1 sporulation transcription factor Spo0A Regulator
  NE411_RS13430 (NE411_13415) spoIVB 2581568..2582866 (-) 1299 WP_002028467.1 SpoIVB peptidase -
  NE411_RS13435 (NE411_13420) recN 2582985..2584724 (-) 1740 WP_000947753.1 DNA repair protein RecN Machinery gene
  NE411_RS13440 (NE411_13425) argR 2584992..2585441 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29454.20 Da        Isoelectric Point: 7.4719

>NTDB_id=699587 NE411_RS13425 WP_014297988.1 2580486..2581280(-) (spo0A) [Bacillus pacificus strain ANSB901]
MEKIKVCLVDDNKELVSMLESYVAAQEDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=699587 NE411_RS13425 WP_014297988.1 2580486..2581280(-) (spo0A) [Bacillus pacificus strain ANSB901]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
GGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAACCGGATGTACTTG
TATTAGATATTATTATGCCACATTTAGATGGGTTAGCTGTACTAGAGAAAATGCGCCACATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCGTTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCGTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAAGCGAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCAAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGGGCAATCC
GTCACGCAATTGAGGTAGCATGGAGTCGCGGGAATATCGATTCTATTTCGTCCTTATTCGGTTATACAGTATCTATGTCA
AAAGCAAAACCTACGAACTCCGAGTTCATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9YJW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

81.273

100

0.822