Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PCP13_RS09080 Genome accession   NZ_CP115256
Coordinates   1954728..1955351 (-) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain F030     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1949728..1960351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP13_RS09055 (PCP13_09060) - 1950510..1951433 (-) 924 WP_003118485.1 choline ABC transporter substrate-binding protein -
  PCP13_RS09060 (PCP13_09065) betC 1951450..1952961 (-) 1512 WP_033940714.1 choline-sulfatase -
  PCP13_RS09065 (PCP13_09070) - 1953074..1953988 (+) 915 WP_263889138.1 choline sulfate utilization transcriptional regulator -
  PCP13_RS09070 (PCP13_09075) - 1953999..1954376 (+) 378 WP_003114635.1 DOPA 4,5-dioxygenase family protein -
  PCP13_RS09075 (PCP13_09080) - 1954355..1954720 (-) 366 WP_003097330.1 Hpt domain-containing protein -
  PCP13_RS09080 (PCP13_09085) letA 1954728..1955351 (-) 624 WP_003111192.1 response regulator transcription factor Regulator
  PCP13_RS09085 (PCP13_09090) trpA 1955537..1956343 (-) 807 WP_003120671.1 tryptophan synthase subunit alpha -
  PCP13_RS09090 (PCP13_09095) trpB 1956340..1957548 (-) 1209 WP_003097340.1 tryptophan synthase subunit beta -
  PCP13_RS09095 (PCP13_09100) trpI 1957652..1958539 (+) 888 WP_003122282.1 trpBA operon transcriptional activator TrpI -
  PCP13_RS09100 (PCP13_09105) - 1958640..1958855 (+) 216 WP_003097345.1 dodecin -
  PCP13_RS09105 (PCP13_09110) - 1959039..1959266 (+) 228 WP_003097347.1 DUF1161 domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=699536 PCP13_RS09080 WP_003111192.1 1954728..1955351(-) (letA) [Pseudomonas aeruginosa strain F030]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=699536 PCP13_RS09080 WP_003111192.1 1954728..1955351(-) (letA) [Pseudomonas aeruginosa strain F030]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAATACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362