Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ49_RS15260 Genome accession   NZ_CP099387
Coordinates   3121709..3122323 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain RHB08-E3-C01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3116709..3127323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ49_RS15245 (NFJ49_15235) helD 3116933..3118987 (-) 2055 WP_279273020.1 DNA helicase IV -
  NFJ49_RS15250 (NFJ49_15240) - 3119113..3119559 (+) 447 WP_016152485.1 YccF domain-containing protein -
  NFJ49_RS15255 (NFJ49_15245) yccS 3119578..3121731 (+) 2154 WP_016152484.1 YccS family putative transporter -
  NFJ49_RS15260 (NFJ49_15250) sxy/tfoX 3121709..3122323 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ49_RS15265 (NFJ49_15255) sulA 3122540..3123049 (+) 510 WP_032931135.1 SOS-induced cell division inhibitor SulA -
  NFJ49_RS15270 (NFJ49_15260) ompA 3123407..3124465 (+) 1059 WP_047414154.1 porin OmpA -
  NFJ49_RS15275 (NFJ49_15265) matP 3124564..3125016 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  NFJ49_RS15280 (NFJ49_15270) - 3125202..3126962 (+) 1761 WP_137352396.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=699342 NFJ49_RS15260 WP_016152483.1 3121709..3122323(-) (sxy/tfoX) [Citrobacter braakii strain RHB08-E3-C01]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=699342 NFJ49_RS15260 WP_016152483.1 3121709..3122323(-) (sxy/tfoX) [Citrobacter braakii strain RHB08-E3-C01]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681