Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFK28_RS15570 Genome accession   NZ_CP099375
Coordinates   3179478..3180092 (-) Length   204 a.a.
NCBI ID   WP_181603855.1    Uniprot ID   -
Organism   Citrobacter braakii strain RHB25-E4-C05     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3174478..3185092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK28_RS15555 (NFK28_15550) helD 3174702..3176756 (-) 2055 WP_019076416.1 DNA helicase IV -
  NFK28_RS15560 (NFK28_15555) - 3176882..3177328 (+) 447 WP_016152485.1 YccF domain-containing protein -
  NFK28_RS15565 (NFK28_15560) yccS 3177347..3179500 (+) 2154 WP_016152484.1 YccS family putative transporter -
  NFK28_RS15570 (NFK28_15565) sxy/tfoX 3179478..3180092 (-) 615 WP_181603855.1 TfoX/Sxy family DNA transformation protein Regulator
  NFK28_RS15575 (NFK28_15570) sulA 3180309..3180818 (+) 510 WP_046275730.1 SOS-induced cell division inhibitor SulA -
  NFK28_RS15580 (NFK28_15575) ompA 3181176..3182234 (+) 1059 WP_046275731.1 porin OmpA -
  NFK28_RS15585 (NFK28_15580) matP 3182332..3182784 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  NFK28_RS15590 (NFK28_15585) - 3182970..3184730 (+) 1761 WP_016156136.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23152.52 Da        Isoelectric Point: 8.6226

>NTDB_id=699117 NFK28_RS15570 WP_181603855.1 3179478..3180092(-) (sxy/tfoX) [Citrobacter braakii strain RHB25-E4-C05]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQFCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=699117 NFK28_RS15570 WP_181603855.1 3179478..3180092(-) (sxy/tfoX) [Citrobacter braakii strain RHB25-E4-C05]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTAGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTTCTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGACCAGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATTTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.657

98.529

0.676