Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NFK84_RS21755 Genome accession   NZ_CP099311
Coordinates   4485309..4486742 (+) Length   477 a.a.
NCBI ID   WP_014171817.1    Uniprot ID   A0A839BTX8
Organism   Enterobacter ludwigii strain RHB43-SE-C05     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4480309..4491742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK84_RS21725 (NFK84_21710) - 4480876..4481853 (+) 978 WP_047743778.1 calcium/sodium antiporter -
  NFK84_RS21730 (NFK84_21715) kdsD 4481867..4482853 (+) 987 WP_020883527.1 arabinose-5-phosphate isomerase KdsD -
  NFK84_RS21735 (NFK84_21720) kdsC 4482868..4483434 (+) 567 WP_014171813.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  NFK84_RS21740 (NFK84_21725) lptC 4483431..4484006 (+) 576 WP_014171814.1 LPS export ABC transporter periplasmic protein LptC -
  NFK84_RS21745 (NFK84_21730) lptA 4483975..4484529 (+) 555 WP_020883526.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  NFK84_RS21750 (NFK84_21735) lptB 4484536..4485261 (+) 726 WP_014171816.1 LPS export ABC transporter ATP-binding protein -
  NFK84_RS21755 (NFK84_21740) rpoN/rpoN1 4485309..4486742 (+) 1434 WP_014171817.1 RNA polymerase factor sigma-54 Machinery gene
  NFK84_RS21760 (NFK84_21745) hpf 4486765..4487052 (+) 288 WP_014171818.1 ribosome hibernation promoting factor -
  NFK84_RS21765 (NFK84_21750) ptsN 4487135..4487626 (+) 492 WP_014171819.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NFK84_RS21770 (NFK84_21755) rapZ 4487672..4488526 (+) 855 WP_014171820.1 RNase adapter RapZ -
  NFK84_RS21775 (NFK84_21760) npr 4488523..4488795 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  NFK84_RS21780 (NFK84_21765) mtgA 4488834..4489559 (-) 726 WP_279261726.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  NFK84_RS21785 (NFK84_21770) elbB 4489556..4490209 (-) 654 WP_121339883.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54206.00 Da        Isoelectric Point: 4.3224

>NTDB_id=698671 NFK84_RS21755 WP_014171817.1 4485309..4486742(+) (rpoN/rpoN1) [Enterobacter ludwigii strain RHB43-SE-C05]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQADLHEEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESMGDEEIELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTILSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=698671 NFK84_RS21755 WP_014171817.1 4485309..4486742(+) (rpoN/rpoN1) [Enterobacter ludwigii strain RHB43-SE-C05]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCGATTCGCCTGTTGCA
ACTGTCCACCTTAGAACTCCAGCAGGAGCTCCAGCAAGCGCTGGATAGCAATCCGTTGCTGGAGCAAGCCGATCTTCATG
AAGAGGTAGATACCCAGCAGTCGCAGGATACTGAAGCACTCGACACCGCCGATGCGCTCGAACAAAAAGAGATGCCGGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGACGA
TGAGCTACCGGTTTATCAGGGTGAAACTACCCAGTCACTGCAGGATTACCTGATGTGGCAGGTGGAACTTACCCCCTTCT
CCGATACTGACCGCGCGATTGCGACATCCATTGTCGATGCCGTGGATGACACCGGTTATCTGACCGTCACGCTGGACGAA
ATTCTGGAAAGCATGGGTGACGAAGAGATTGAACTCGAGGAGATAGAAGCCGTTCTGAAGCGCATTCAGCGTTTCGATCC
GGTTGGGGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTTATCCAACTTTCTCAGTTCAGCAAAGAGACGCCATGGCTTG
ATGAAGCCCGCTTGATCATCAGCGACCATCTGGATCTTCTGGCCAATCACGATTTCCGCAGCCTGATGCGCGTCACGCGC
CTGAAAGAAGAGGTGCTGAAAGAGGCGGTCAATCTGATTCAGTCCCTCGATCCGCGCCCCGGTCAGTCCATTCAGACCAG
CGAACCCGAGTACGTCATCCCGGATGTGCTGGTCAGAAAACACAATGACCGCTGGGTCGTTGAACTGAACTCAGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGTAACGACTCCGATAATCAATACATTCGT
AGCAATTTGCAGGAAGCGCGATGGTTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTCCGCGTAAGCCGCTGTAT
TGTCGAACAGCAGCAGGCATTCTTTGAGCAGGGTGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGTCCACGCGGTATATTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGTGAAGCGTCGTCAACGGCCATTCGCGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTGAGCGACAGTAAGTTAACCACCATACTGTCCGACCAGGGTATTATGGTGG
CACGCCGAACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BTX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.941

100

0.486