Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NF323_RS03900 Genome accession   NZ_CP098820
Coordinates   822107..822502 (+) Length   131 a.a.
NCBI ID   WP_023351359.1    Uniprot ID   A0A7X9WCS4
Organism   Staphylococcus capitis strain XWZ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 817107..827502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF323_RS03870 (NF323_03870) atpD 817325..818737 (+) 1413 WP_002435865.1 F0F1 ATP synthase subunit beta -
  NF323_RS03875 (NF323_03875) - 818757..819161 (+) 405 WP_002435826.1 F0F1 ATP synthase subunit epsilon -
  NF323_RS03880 (NF323_03880) - 819302..819535 (+) 234 WP_002453705.1 DUF1146 family protein -
  NF323_RS03885 (NF323_03885) murA 819645..820910 (+) 1266 WP_002435807.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NF323_RS03890 (NF323_03890) fabZ 820955..821392 (+) 438 WP_023351358.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NF323_RS03895 (NF323_03895) - 821473..821916 (-) 444 WP_002435823.1 YwpF-like family protein -
  NF323_RS03900 (NF323_03900) ssb 822107..822502 (+) 396 WP_023351359.1 single-stranded DNA-binding protein Machinery gene
  NF323_RS03905 (NF323_03905) - 822897..823622 (+) 726 WP_023351360.1 transglycosylase family protein -
  NF323_RS03910 (NF323_03910) tenA 823918..824607 (+) 690 WP_030063292.1 thiaminase II -
  NF323_RS03915 (NF323_03915) thiD 824600..825421 (+) 822 WP_002435497.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NF323_RS03920 (NF323_03920) thiM 825414..826202 (+) 789 WP_023351361.1 hydroxyethylthiazole kinase -
  NF323_RS03925 (NF323_03925) thiE 826209..826847 (+) 639 WP_023351362.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15172.04 Da        Isoelectric Point: 5.2691

>NTDB_id=698176 NF323_RS03900 WP_023351359.1 822107..822502(+) (ssb) [Staphylococcus capitis strain XWZ]
MLNKIVIVGRLTKDAQIYEKEDNKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=698176 NF323_RS03900 WP_023351359.1 822107..822502(+) (ssb) [Staphylococcus capitis strain XWZ]
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAGGATAATAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9WCS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

76.336

100

0.763
  ssb Staphylococcus aureus MW2

75.573

100

0.756