NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	NE424_RS20820	Genome accession	NZ_CP098795
Coordinates	2464910..2465770 (+)	Length	286 a.a.
NCBI ID	WP_031966875.1	Uniprot ID	A0A505MH08
Organism	Acinetobacter baumannii strain VB280821
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2459910..2470770

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NE424_RS11920 (NE424_11920)	secG	2460515..2460844 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
NE424_RS11925 (NE424_11925)	tpiA	2460857..2461651 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
NE424_RS11930 (NE424_11930)	pilB	2461942..2463654 (+)	1713	WP_031966873.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NE424_RS11935 (NE424_11935)	pilC	2463684..2464910 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
NE424_RS20820	pilD	2464910..2465770 (+)	861	WP_031966875.1	A24 family peptidase	Machinery gene
NE424_RS11950 (NE424_11950)	coaE	2465772..2466368 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
NE424_RS11955 (NE424_11955)	-	2466365..2467279 (-)	915	WP_000075020.1	DMT family transporter	-
NE424_RS11960 (NE424_11960)	rlmB	2467315..2468064 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
NE424_RS11965 (NE424_11965)	-	2468166..2468492 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
NE424_RS11970 (NE424_11970)	-	2468569..2469879 (-)	1311	WP_000753285.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32060.45 Da Isoelectric Point: 7.1041

                                >NTDB_id=698098 NE424_RS20820 WP_031966875.1 2464910..2465770(+) (pilD) [Acinetobacter baumannii strain VB280821]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=698098 NE424_RS20820 WP_031966875.1 2464910..2465770(+) (pilD) [Acinetobacter baumannii strain VB280821]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA

ATCCTGAGCAACCGATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG

TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTGTTTGGCCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A505MH08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437

Detailed information NTG0698098