Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NE424_RS15645 Genome accession   NZ_CP098795
Coordinates   3247092..3247727 (-) Length   211 a.a.
NCBI ID   WP_002125534.1    Uniprot ID   A0A429LTT3
Organism   Acinetobacter baumannii strain VB280821     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3242092..3252727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE424_RS15610 (NE424_15610) mlaE 3242428..3243204 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  NE424_RS15615 (NE424_15615) - 3243204..3243884 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  NE424_RS15620 (NE424_15620) - 3243911..3244552 (+) 642 WP_192596725.1 ABC transporter substrate-binding protein -
  NE424_RS15625 (NE424_15625) - 3244564..3244851 (+) 288 WP_000250997.1 STAS domain-containing protein -
  NE424_RS15630 (NE424_15630) - 3244921..3245934 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  NE424_RS15635 (NE424_15635) - 3246092..3246673 (+) 582 WP_031966425.1 TIGR00730 family Rossman fold protein -
  NE424_RS15640 (NE424_15640) - 3246688..3247089 (+) 402 WP_000849701.1 NUDIX domain-containing protein -
  NE424_RS15645 (NE424_15645) comF 3247092..3247727 (-) 636 WP_002125534.1 phosphoribosyltransferase family protein Machinery gene
  NE424_RS15650 (NE424_15650) recG 3247720..3249765 (-) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  NE424_RS15655 (NE424_15655) - 3249786..3250601 (+) 816 WP_000547776.1 NAD(P)H-binding protein -
  NE424_RS15660 (NE424_15660) adeT2 3250681..3251667 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24551.67 Da        Isoelectric Point: 9.7140

>NTDB_id=698091 NE424_RS15645 WP_002125534.1 3247092..3247727(-) (comF) [Acinetobacter baumannii strain VB280821]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLVSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=698091 NE424_RS15645 WP_002125534.1 3247092..3247727(-) (comF) [Acinetobacter baumannii strain VB280821]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGAGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTGTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A429LTT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986