Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   NE424_RS15250 Genome accession   NZ_CP098795
Coordinates   3167269..3167742 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain VB280821     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3162269..3172742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE424_RS15225 (NE424_15225) - 3162732..3164837 (-) 2106 WP_001117590.1 HD domain-containing protein -
  NE424_RS15230 (NE424_15230) - 3164877..3165007 (-) 131 Protein_2980 hypothetical protein -
  NE424_RS15235 (NE424_15235) rpoZ 3165046..3165324 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NE424_RS15240 (NE424_15240) gmk 3165397..3166026 (-) 630 WP_000015937.1 guanylate kinase -
  NE424_RS15245 (NE424_15245) ispH 3166149..3167099 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NE424_RS15250 (NE424_15250) fimU 3167269..3167742 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  NE424_RS15255 (NE424_15255) pilV 3167736..3168296 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NE424_RS15260 (NE424_15260) pilW 3168297..3169298 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  NE424_RS15265 (NE424_15265) pilX 3169295..3170113 (+) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=698084 NE424_RS15250 WP_001214065.1 3167269..3167742(+) (fimU) [Acinetobacter baumannii strain VB280821]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=698084 NE424_RS15250 WP_001214065.1 3167269..3167742(+) (fimU) [Acinetobacter baumannii strain VB280821]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1