Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NE424_RS15255 Genome accession   NZ_CP098795
Coordinates   3167736..3168296 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain VB280821     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3162736..3173296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE424_RS15230 (NE424_15230) - 3164877..3165007 (-) 131 Protein_2980 hypothetical protein -
  NE424_RS15235 (NE424_15235) rpoZ 3165046..3165324 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NE424_RS15240 (NE424_15240) gmk 3165397..3166026 (-) 630 WP_000015937.1 guanylate kinase -
  NE424_RS15245 (NE424_15245) ispH 3166149..3167099 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NE424_RS15250 (NE424_15250) fimU 3167269..3167742 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  NE424_RS15255 (NE424_15255) pilV 3167736..3168296 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NE424_RS15260 (NE424_15260) pilW 3168297..3169298 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  NE424_RS15265 (NE424_15265) pilX 3169295..3170113 (+) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=698085 NE424_RS15255 WP_002194578.1 3167736..3168296(+) (pilV) [Acinetobacter baumannii strain VB280821]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=698085 NE424_RS15255 WP_002194578.1 3167736..3168296(+) (pilV) [Acinetobacter baumannii strain VB280821]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414