Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   NE424_RS04400 Genome accession   NZ_CP098795
Coordinates   913154..913534 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain VB280821     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 908154..918534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE424_RS04370 (NE424_04370) tadA 908273..908776 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  NE424_RS04375 (NE424_04375) - 908783..909907 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  NE424_RS04380 (NE424_04380) ung 909904..910617 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  NE424_RS04385 (NE424_04385) - 910668..911264 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  NE424_RS04390 (NE424_04390) gspK 911494..912453 (-) 960 WP_000301464.1 type II secretion system minor pseudopilin GspK -
  NE424_RS04395 (NE424_04395) xcpW 912453..913154 (-) 702 WP_000594576.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NE424_RS04400 (NE424_04400) xcpV 913154..913534 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  NE424_RS04405 (NE424_04405) - 913524..914078 (-) 555 WP_000841373.1 type II secretion system protein -
  NE424_RS04410 (NE424_04410) - 914088..914696 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  NE424_RS04415 (NE424_04415) - 914734..915507 (-) 774 WP_000497303.1 TatD family hydrolase -
  NE424_RS04420 (NE424_04420) - 915525..915866 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  NE424_RS04425 (NE424_04425) - 915878..916858 (-) 981 WP_252172179.1 DNA polymerase III subunit delta' -
  NE424_RS04430 (NE424_04430) kdsB 916870..917631 (-) 762 WP_000680704.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=698053 NE424_RS04400 WP_000836911.1 913154..913534(-) (xcpV) [Acinetobacter baumannii strain VB280821]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=698053 NE424_RS04400 WP_000836911.1 913154..913534(-) (xcpV) [Acinetobacter baumannii strain VB280821]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1