NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	NE424_RS04395	Genome accession	NZ_CP098795
Coordinates	912453..913154 (-)	Length	233 a.a.
NCBI ID	WP_000594576.1	Uniprot ID	A0A429LRQ6
Organism	Acinetobacter baumannii strain VB280821
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 907453..918154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NE424_RS04365 (NE424_04365)	-	907760..908203 (-)	444	WP_001246675.1	SRPBCC family protein	-
NE424_RS04370 (NE424_04370)	tadA	908273..908776 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
NE424_RS04375 (NE424_04375)	-	908783..909907 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
NE424_RS04380 (NE424_04380)	ung	909904..910617 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
NE424_RS04385 (NE424_04385)	-	910668..911264 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
NE424_RS04390 (NE424_04390)	gspK	911494..912453 (-)	960	WP_000301464.1	type II secretion system minor pseudopilin GspK	-
NE424_RS04395 (NE424_04395)	xcpW	912453..913154 (-)	702	WP_000594576.1	type II secretion system minor pseudopilin GspJ	Machinery gene
NE424_RS04400 (NE424_04400)	xcpV	913154..913534 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
NE424_RS04405 (NE424_04405)	-	913524..914078 (-)	555	WP_000841373.1	type II secretion system protein	-
NE424_RS04410 (NE424_04410)	-	914088..914696 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
NE424_RS04415 (NE424_04415)	-	914734..915507 (-)	774	WP_000497303.1	TatD family hydrolase	-
NE424_RS04420 (NE424_04420)	-	915525..915866 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
NE424_RS04425 (NE424_04425)	-	915878..916858 (-)	981	WP_252172179.1	DNA polymerase III subunit delta'	-
NE424_RS04430 (NE424_04430)	kdsB	916870..917631 (-)	762	WP_000680704.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26643.61 Da Isoelectric Point: 9.5501

                                >NTDB_id=698052 NE424_RS04395 WP_000594576.1 912453..913154(-) (xcpW) [Acinetobacter baumannii strain VB280821]

MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEINIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=698052 NE424_RS04395 WP_000594576.1 912453..913154(-) (xcpW) [Acinetobacter baumannii strain VB280821]

ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGATTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A429LRQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991

Detailed information NTG0698052