Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NE421_RS17625 Genome accession   NZ_CP098791
Coordinates   3703940..3704575 (+) Length   211 a.a.
NCBI ID   WP_002125534.1    Uniprot ID   A0A429LTT3
Organism   Acinetobacter baumannii strain 280820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3698940..3709575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE421_RS17610 (NE421_17610) adeT2 3700000..3700986 (-) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  NE421_RS17615 (NE421_17615) - 3701066..3701881 (-) 816 WP_000547776.1 NAD(P)H-binding protein -
  NE421_RS17620 (NE421_17620) recG 3701902..3703947 (+) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  NE421_RS17625 (NE421_17625) comF 3703940..3704575 (+) 636 WP_002125534.1 phosphoribosyltransferase family protein Machinery gene
  NE421_RS17630 (NE421_17630) - 3704578..3704979 (-) 402 WP_000849701.1 NUDIX domain-containing protein -
  NE421_RS17635 (NE421_17635) - 3704994..3705575 (-) 582 WP_031966425.1 TIGR00730 family Rossman fold protein -
  NE421_RS17640 (NE421_17640) - 3705733..3706746 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  NE421_RS17645 (NE421_17645) - 3706816..3707103 (-) 288 WP_000250997.1 STAS domain-containing protein -
  NE421_RS17650 (NE421_17650) - 3707115..3707756 (-) 642 WP_192596725.1 ABC transporter substrate-binding protein -
  NE421_RS17655 (NE421_17655) - 3707783..3708463 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  NE421_RS17660 (NE421_17660) mlaE 3708463..3709239 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24551.67 Da        Isoelectric Point: 9.7140

>NTDB_id=698035 NE421_RS17625 WP_002125534.1 3703940..3704575(+) (comF) [Acinetobacter baumannii strain 280820]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLVSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=698035 NE421_RS17625 WP_002125534.1 3703940..3704575(+) (comF) [Acinetobacter baumannii strain 280820]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGAGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTGTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A429LTT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986