Detailed information NTG0697867

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NFG60_RS18500
• Genome accession: NZ_CP098772
• Coordinates: 4357732..4358625 (+)
• Length: 297 a.a.
• NCBI ID: WP_252118940.1
• Uniprot ID: -
• Organism: Alteromonas macleodii strain QZ9-9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4352732..4363625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NFG60_RS18475 (NFG60_18475)	ampD	4353268..4353807 (-)	540	WP_252118938.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
NFG60_RS18480 (NFG60_18480)	-	4353991..4354509 (+)	519	WP_014950400.1	TIGR02281 family clan AA aspartic protease	-
NFG60_RS18485 (NFG60_18485)	nadC	4354542..4355396 (+)	855	WP_252120143.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NFG60_RS18490 (NFG60_18490)	-	4355966..4356388 (+)	423	WP_286208348.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NFG60_RS18495 (NFG60_18495)	pilC	4356471..4357679 (+)	1209	WP_252118939.1	type II secretion system F family protein	Machinery gene
NFG60_RS18500 (NFG60_18500)	pilD	4357732..4358625 (+)	894	WP_252118940.1	A24 family peptidase	Machinery gene
NFG60_RS18505 (NFG60_18505)	coaE	4358644..4359255 (+)	612	WP_252118941.1	dephospho-CoA kinase	-
NFG60_RS18510 (NFG60_18510)	zapD	4359499..4360251 (+)	753	WP_039227984.1	cell division protein ZapD	-
NFG60_RS18515 (NFG60_18515)	yacG	4360393..4360620 (+)	228	WP_014980027.1	DNA gyrase inhibitor YacG	-
NFG60_RS18520 (NFG60_18520)	-	4360840..4361712 (+)	873	WP_239300629.1	aspartoacylase	-
NFG60_RS18525 (NFG60_18525)	-	4361800..4363089 (-)	1290	WP_039227980.1	methyl-accepting chemotaxis protein	-
NFG60_RS18530 (NFG60_18530)	-	4363099..4363467 (-)	369	WP_014950410.1	response regulator	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32831.89 Da
• Isoelectric Point: 7.0536

>NTDB_id=697867 NFG60_RS18500 WP_252118940.1 4357732..4358625(+) (pilD) [Alteromonas macleodii strain QZ9-9]
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSAGEPTPNDKNSTASEEVFNLVKPDST
CPSCGHKIRAWENIPVISYLFLKGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL

Nucleotide

• Length: 894 bp

>NTDB_id=697867 NFG60_RS18500 WP_252118940.1 4357732..4358625(+) (pilD) [Alteromonas macleodii strain QZ9-9]
ATGGACGCGATAATTACGCTTAGTCAGCTTTACCCTGCTGTATTCTATTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAACGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAGAGCTATTTTA
GCGCGGGTGAGCCGACACCTAACGATAAAAACTCAACAGCGTCAGAGGAAGTATTCAACCTTGTAAAACCAGACAGCACA
TGCCCTAGCTGCGGCCACAAAATTCGCGCATGGGAAAATATTCCTGTTATTAGCTACCTGTTCCTTAAAGGTAAATGCGC
TAAATGCAAAGTTGGAATATCAGTTCGTTACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCATTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTTTTTATTGACTTAGAT
AAGATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTGGGGTTACTGTTGAGCACGCAACACATTTTTGTAGG
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGTTTATGGTCTGTTTATTGGCTATTTAAACTTGCCACTG
GCAAAGAAGGTATGGGCTATGGCGATTTCAAGCTGCTCGCCGCACTTGGCGCTTATACGGGCTGGCAAGGTTTGCCCATT
ATTATCTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTATCTTG
ATTACGTACTTTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (146-254)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-135)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.088	95.96	0.529
pilD	Vibrio campbellii strain DS40M4	53.103	97.643	0.519
pilD	Acinetobacter baumannii D1279779	50.538	93.939	0.475
pilD	Acinetobacter nosocomialis M2	50.179	93.939	0.471
pilD	Neisseria gonorrhoeae MS11	47.94	89.899	0.431