Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NDR85_RS17940 Genome accession   NZ_CP098738
Coordinates   3551018..3552412 (-) Length   464 a.a.
NCBI ID   WP_263870758.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3546018..3557412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS17905 (NDR85_17865) flgL 3546195..3547091 (-) 897 WP_044159454.1 flagellar hook-associated protein FlgL -
  NDR85_RS17910 (NDR85_17870) flgK 3547101..3548624 (-) 1524 WP_044159457.1 flagellar hook-associated protein FlgK -
  NDR85_RS17915 (NDR85_17875) flgN 3548643..3549125 (-) 483 WP_010332064.1 flagellar protein FlgN -
  NDR85_RS17920 (NDR85_17880) flgM 3549140..3549406 (-) 267 WP_044159458.1 flagellar biosynthesis anti-sigma factor FlgM -
  NDR85_RS17925 (NDR85_17885) - 3549486..3549905 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  NDR85_RS17930 (NDR85_17890) comFC 3549979..3550701 (-) 723 WP_044159461.1 amidophosphoribosyltransferase Machinery gene
  NDR85_RS17935 (NDR85_17895) - 3550665..3550961 (-) 297 WP_044159464.1 late competence development ComFB family protein -
  NDR85_RS17940 (NDR85_17900) comFA 3551018..3552412 (-) 1395 WP_263870758.1 ATP-dependent helicase ComFA Machinery gene
  NDR85_RS17945 (NDR85_17905) - 3552519..3553364 (-) 846 WP_044159470.1 DegV family protein -
  NDR85_RS17950 (NDR85_17910) degU 3553461..3554150 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NDR85_RS17955 (NDR85_17915) degS 3554233..3555390 (-) 1158 WP_044159475.1 two-component sensor histidine kinase DegS Regulator
  NDR85_RS17960 (NDR85_17920) - 3555607..3556260 (+) 654 WP_044159478.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52883.84 Da        Isoelectric Point: 9.4112

>NTDB_id=697582 NDR85_RS17940 WP_263870758.1 3551018..3552412(-) (comFA) [Bacillus halotolerans strain XE48]
MHTKTSESNSLFSKELQQQLQGRHLLRTEIPFSDEIIDWHIEHGYISAEGSISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRVSEDVSLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IELALNLRLRVCIATPRTDVVLELAPRLNAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGDWKKKLTRNKIPNAVK
RWIDQHVKEERPVFLFVPSISVLEKAASCFKDMNYRTAAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQITGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=697582 NDR85_RS17940 WP_263870758.1 3551018..3552412(-) (comFA) [Bacillus halotolerans strain XE48]
ATGCACACTAAGACATCAGAATCGAACAGCCTATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTGAG
AACAGAAATCCCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGGGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATGTTTCTTTATATTCCTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATTGGCATTAAATTTAAGACTGCGTGTTTGTATTGCAACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAATGCTGCATTTCAGGGTGCTGATATTTCAGCTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGCTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACATATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAGC
CATTGCCTGAACCGCGCTTTCAGTGGTGCGGAGACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGATCAGCATGTGAAAGAAGAAAGGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTTTGGAAAAGGCTGC
TTCTTGTTTTAAAGATATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCACGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAGCATATAAAAATAATGA
ATGAATTGGCTCTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-424)

Type III restriction enzyme, res subunit (ResIII)

(121-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

83.843

98.707

0.828