Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NDR85_RS17930 Genome accession   NZ_CP098738
Coordinates   3549979..3550701 (-) Length   240 a.a.
NCBI ID   WP_044159461.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3544979..3555701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS17895 (NDR85_17855) fliW 3545121..3545552 (-) 432 WP_024123020.1 flagellar assembly protein FliW -
  NDR85_RS17900 (NDR85_17860) - 3545573..3546148 (-) 576 WP_044159452.1 DUF6470 family protein -
  NDR85_RS17905 (NDR85_17865) flgL 3546195..3547091 (-) 897 WP_044159454.1 flagellar hook-associated protein FlgL -
  NDR85_RS17910 (NDR85_17870) flgK 3547101..3548624 (-) 1524 WP_044159457.1 flagellar hook-associated protein FlgK -
  NDR85_RS17915 (NDR85_17875) flgN 3548643..3549125 (-) 483 WP_010332064.1 flagellar protein FlgN -
  NDR85_RS17920 (NDR85_17880) flgM 3549140..3549406 (-) 267 WP_044159458.1 flagellar biosynthesis anti-sigma factor FlgM -
  NDR85_RS17925 (NDR85_17885) - 3549486..3549905 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  NDR85_RS17930 (NDR85_17890) comFC 3549979..3550701 (-) 723 WP_044159461.1 amidophosphoribosyltransferase Machinery gene
  NDR85_RS17935 (NDR85_17895) - 3550665..3550961 (-) 297 WP_044159464.1 late competence development ComFB family protein -
  NDR85_RS17940 (NDR85_17900) comFA 3551018..3552412 (-) 1395 WP_263870758.1 ATP-dependent helicase ComFA Machinery gene
  NDR85_RS17945 (NDR85_17905) - 3552519..3553364 (-) 846 WP_044159470.1 DegV family protein -
  NDR85_RS17950 (NDR85_17910) degU 3553461..3554150 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NDR85_RS17955 (NDR85_17915) degS 3554233..3555390 (-) 1158 WP_044159475.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27022.30 Da        Isoelectric Point: 8.9996

>NTDB_id=697581 NDR85_RS17930 WP_044159461.1 3549979..3550701(-) (comFC) [Bacillus halotolerans strain XE48]
MRNETGGGSKKLICLLCDSQFSQAVSWCSLFLLKPDDRVCQSCRNKLQIIKGAICPLCGRPQTAHEVCADCEAWKSRIDD
GLRLSQNRSVYLYNDMMKETLARMKFRGDAAIISAFKNDFSSEFSAVYPDKRLVLVPIPLSEERKAERGFNQSQMLAECL
NRPIINPLIRLNNEKQSKKKKTERLLSEHVFKTKNSSVEGMDIVLIDDLYTTGATLHYAARCLLEKGKAGSVSSFTLVRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=697581 NDR85_RS17930 WP_044159461.1 3549979..3550701(-) (comFC) [Bacillus halotolerans strain XE48]
ATGCGAAACGAGACAGGAGGAGGCTCTAAAAAACTGATCTGTCTATTATGTGATTCACAATTTTCTCAAGCTGTTTCATG
GTGCTCACTATTCTTATTAAAACCTGACGACAGGGTCTGTCAGTCCTGCAGAAACAAATTACAGATCATCAAAGGGGCCA
TCTGTCCGCTTTGCGGCAGGCCTCAAACCGCTCATGAAGTGTGCGCGGATTGCGAGGCATGGAAATCAAGAATAGATGAC
GGCTTAAGGCTCAGTCAAAACCGTTCTGTTTACTTATATAATGACATGATGAAAGAAACGCTCGCCCGAATGAAATTCAG
GGGAGATGCAGCAATAATAAGCGCTTTTAAAAATGACTTTTCCTCAGAATTCTCTGCTGTCTATCCAGATAAACGCCTTG
TGCTCGTTCCAATTCCGTTAAGCGAAGAACGGAAAGCAGAACGCGGCTTTAACCAGTCACAAATGCTTGCTGAATGCTTA
AACAGGCCCATCATCAATCCTCTCATCCGCCTGAATAATGAAAAGCAGTCTAAGAAAAAGAAAACGGAGCGCCTGCTTTC
AGAGCATGTTTTTAAAACAAAAAACAGCTCGGTTGAGGGTATGGATATCGTTTTAATCGACGATCTTTATACTACGGGCG
CCACTTTGCACTATGCTGCCCGCTGTTTATTGGAGAAAGGCAAAGCTGGTTCTGTGTCATCTTTTACCTTAGTGAGAAGC
TAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(184-238)

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

76.25

100

0.763