Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NDR85_RS12410 Genome accession   NZ_CP098738
Coordinates   2487761..2489491 (-) Length   576 a.a.
NCBI ID   WP_044154648.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2482761..2494491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS12390 (NDR85_12365) - 2483326..2483460 (+) 135 WP_024122000.1 hypothetical protein -
  NDR85_RS12395 (NDR85_12370) - 2483533..2484651 (+) 1119 WP_044154650.1 NADH-dependent flavin oxidoreductase -
  NDR85_RS12400 (NDR85_12375) spo0A 2485231..2486034 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  NDR85_RS12405 (NDR85_12380) spoIVB 2486309..2487586 (-) 1278 WP_024122004.1 SpoIVB peptidase -
  NDR85_RS12410 (NDR85_12385) recN 2487761..2489491 (-) 1731 WP_044154648.1 DNA repair protein RecN Machinery gene
  NDR85_RS12415 (NDR85_12390) argR 2489527..2489976 (-) 450 WP_010334883.1 arginine repressor ArgR -
  NDR85_RS12420 (NDR85_12395) - 2490073..2490918 (-) 846 WP_044154647.1 TlyA family RNA methyltransferase -
  NDR85_RS12425 (NDR85_12400) dxs 2490915..2492816 (-) 1902 WP_044154645.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NDR85_RS12430 (NDR85_12405) - 2492992..2493882 (-) 891 WP_044154644.1 polyprenyl synthetase family protein -
  NDR85_RS12435 (NDR85_12410) - 2493872..2494126 (-) 255 WP_024122010.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64748.62 Da        Isoelectric Point: 4.6801

>NTDB_id=697551 NDR85_RS12410 WP_044154648.1 2487761..2489491(-) (recN) [Bacillus halotolerans strain XE48]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFDVC
AEQGIDVSDEMIVMRRDISTNGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIFESLQNAYNALRSE
QGGLDWVGMASSQLEDLSDINEPLQKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKQELDSVGKDVAVEAANVSRIRKMWAKKLAEEIHRELKSLYMEKSTFDTEFKV
RMATRGEEAPVINGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLTKQEKVTEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=697551 NDR85_RS12410 WP_044154648.1 2487761..2489491(-) (recN) [Bacillus halotolerans strain XE48]
TTGTTAGCTGAATTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCACTTTTGGTCGGTGGCCGCGGTTCATCTGAAT
TTGTCAGATATGGAGAAACAAAAGCCGAGCTTGAAGGGCTGTTTCTGTTAGATAGCGGCCATCCCGTTTTTGACGTTTGT
GCTGAACAGGGGATTGACGTTTCAGATGAAATGATCGTCATGAGAAGGGATATCAGCACGAACGGAAAAAGCGTATGCCG
GGTTAATGGCAAACTTGTAACGATTGCGTCGCTTAGAGAAATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAACCATCTTCAGCTTTTGGACAAGTTTGCGGGAGCCGAAGTGGAAAGCGCACTTCAA
GCGTATCAGGAAGGCTATCAGCGATATATGAAGCTGCTTAAAAAGCTGAAGCAGCTTTCTGAAAGTGAGCAGGAAATGGC
ACACCGGCTTGATCTGATTCAATTTCAGCTGGAAGAAATCGAATCAGCAAAGCTTGAACTGAACGAAGATGAGCAGCTGC
AAGAAGAGCGCCAGCAAATTTCAAATTTTGAGAAAATATTTGAATCACTGCAAAATGCTTATAACGCGCTGCGCAGCGAG
CAGGGCGGTCTGGACTGGGTCGGAATGGCGTCGTCTCAGCTTGAAGATTTATCCGATATTAACGAACCGCTGCAAAAACT
TTCTGAGAGTGTTTCGAACTCCTACTACCTTTTAGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAGCGCTTGAATTTTATTGAGACTCGTCTTAATGAGATCAAGCAGCTGAAGCGGAAATACGGGGCAACCGTT
GAGGATATTTTAGAATATGCTTCTAAAATTGAAGAAGAGATTGATCAAATTGAAAACAGAGACAGCCATCTGCAAAGTCT
GAAGCAGGAGCTGGATTCGGTTGGTAAAGATGTTGCAGTGGAAGCGGCAAACGTTTCCCGAATCCGAAAAATGTGGGCGA
AAAAGCTGGCTGAGGAAATCCATCGTGAACTGAAAAGCTTATATATGGAAAAGTCGACTTTCGATACGGAGTTTAAGGTC
AGAATGGCGACCCGCGGTGAGGAAGCGCCGGTCATAAACGGACAGCCTGTTCAGCTCACTGAACAAGGGATTGATCTGGT
GAAGTTTTTAATTTCCACCAATACGGGCGAGCCGCTGAAATCTCTTTCTAAAGTCGCTTCCGGCGGAGAGCTGTCGAGGG
TCATGCTTGCCATTAAAAGCATTTTTTCCTCACAGCAGGACGTTACCTCGATTATATTTGACGAGGTAGATACAGGCGTA
AGCGGCAGGGTCGCTCAGGCTATTGCTGAAAAGATTCACAAAGTATCGATGGGATCACAAGTGCTATGCATTACGCACCT
GCCTCAGGTAGCAGCCATGGCCGATACCCATCTTTACATTGCGAAAGAATTAAAAGACGGAAGAACGACGACGCGTGTAA
AGCCGCTGACTAAACAAGAGAAGGTGACGGAAATCGGACGCATGATAGCAGGAGTCGAAGTTACAGACTTGACGAAACGC
CATGCGAAAGAGCTGTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

95.312

100

0.953