Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NDR85_RS12400 Genome accession   NZ_CP098738
Coordinates   2485231..2486034 (-) Length   267 a.a.
NCBI ID   WP_010334880.1    Uniprot ID   A0A9Q4HNW6
Organism   Bacillus halotolerans strain XE48     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2480231..2491034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS12375 (NDR85_12350) - 2481229..2481972 (-) 744 WP_044154653.1 glycerophosphodiester phosphodiesterase -
  NDR85_RS12380 (NDR85_12355) - 2482062..2482682 (-) 621 WP_083244528.1 N-acetylmuramoyl-L-alanine amidase -
  NDR85_RS12385 (NDR85_12360) - 2482705..2482998 (-) 294 WP_044154651.1 hypothetical protein -
  NDR85_RS12390 (NDR85_12365) - 2483326..2483460 (+) 135 WP_024122000.1 hypothetical protein -
  NDR85_RS12395 (NDR85_12370) - 2483533..2484651 (+) 1119 WP_044154650.1 NADH-dependent flavin oxidoreductase -
  NDR85_RS12400 (NDR85_12375) spo0A 2485231..2486034 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  NDR85_RS12405 (NDR85_12380) spoIVB 2486309..2487586 (-) 1278 WP_024122004.1 SpoIVB peptidase -
  NDR85_RS12410 (NDR85_12385) recN 2487761..2489491 (-) 1731 WP_044154648.1 DNA repair protein RecN Machinery gene
  NDR85_RS12415 (NDR85_12390) argR 2489527..2489976 (-) 450 WP_010334883.1 arginine repressor ArgR -
  NDR85_RS12420 (NDR85_12395) - 2490073..2490918 (-) 846 WP_044154647.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29719.20 Da        Isoelectric Point: 6.3913

>NTDB_id=697550 NDR85_RS12400 WP_010334880.1 2485231..2486034(-) (spo0A) [Bacillus halotolerans strain XE48]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKRKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=697550 NDR85_RS12400 WP_010334880.1 2485231..2486034(-) (spo0A) [Bacillus halotolerans strain XE48]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTCATCGGAGTTGCGTATAACGGACAGGAATGCCTGTCGCTATTTAAAGAAAAAGATCCTGATGTGCTCG
TCTTGGATATTATTATGCCTCATTTGGACGGACTTGCTGTTTTAGAGCGACTGAGAGAATCCGATCTGAAAAAACAGCCA
AACGTCATCATGCTGACAGCCTTCGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGAGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGCGCGC
CGTCATCACAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAGGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCTGCACATATTAAAGGCTATCTCTATCTGCGTGAAGCGATCTCAATGGTGTACAACGATAT
CGAGCTGCTCGGCAGTATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCTAGCCGTGTAGAAA
GAGCGATCCGCCACGCGATTGAAGTGGCATGGAGCAGAGGGAATATTGATTCCATTTCCTCATTGTTCGGCTATACGGTC
AGCATGACGAAGGCAAAACCTACAAATTCAGAGTTCATTGCGATGGTTGCAGACAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996