Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   NDR85_RS06470 Genome accession   NZ_CP098738
Coordinates   1309753..1310904 (+) Length   383 a.a.
NCBI ID   WP_044156383.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1304753..1315904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS06440 (NDR85_06440) - 1305423..1306640 (+) 1218 WP_263870994.1 MFS transporter -
  NDR85_RS06445 (NDR85_06445) - 1306808..1307386 (+) 579 WP_010333747.1 GNAT family N-acetyltransferase -
  NDR85_RS06450 (NDR85_06450) spx 1307566..1307961 (+) 396 WP_024120919.1 transcriptional regulator Spx -
  NDR85_RS06455 (NDR85_06455) - 1308004..1308660 (-) 657 WP_044156385.1 TerC family protein -
  NDR85_RS06460 (NDR85_06460) - 1308832..1308972 (+) 141 WP_125825429.1 hypothetical protein -
  NDR85_RS06465 (NDR85_06465) mecA 1308939..1309595 (+) 657 WP_024120921.1 adaptor protein MecA Regulator
  NDR85_RS06470 (NDR85_06470) coiA 1309753..1310904 (+) 1152 WP_044156383.1 competence protein CoiA family protein Machinery gene
  NDR85_RS06475 (NDR85_06475) pepF 1311134..1312963 (+) 1830 WP_176471078.1 oligoendopeptidase F -
  NDR85_RS06480 (NDR85_06480) - 1313000..1313167 (-) 168 WP_024120925.1 hypothetical protein -
  NDR85_RS06485 (NDR85_06485) spxH 1313481..1314380 (-) 900 WP_044156379.1 protease adaptor protein SpxH -
  NDR85_RS06490 (NDR85_06490) - 1314377..1314775 (-) 399 WP_010333756.1 thiol management oxidoreductase -
  NDR85_RS06495 (NDR85_06495) - 1315032..1315763 (-) 732 WP_044156378.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44827.96 Da        Isoelectric Point: 9.7675

>NTDB_id=697537 NDR85_RS06470 WP_044156383.1 1309753..1310904(+) (coiA) [Bacillus halotolerans strain XE48]
MFSAVTEDGQVFHLIGRQRREQLKQTRFFCPVCAEELDVKLGSQKAPHFAHKQNKSCTIDIEPESAYHLEGKRQLYVWLK
TQKASPLLEPYVKEIKQRPDILAKVKGDTLAVEYQCATLAPDVFQKRTAGFKQAGMIPQWILGGSRLKRTSSSFYQLSDF
HWQFINASPNSDLLCYCPETHSFLRLSRMIPFYTTHFYCSVQTIPIRQAAAEDLFFTEPDSSFKHSDWIGAILRFRRKTH
RFLSKDMNRIRLLFYEKRQTPLSFLPTEVFVPVKKGAVFKSPVFVWQGYLYLFITDLGYKHAPIRFSAVLQHCKIHIHKK
NILLRGVYRDQDFIEAVKQYIEFLCKKGFLRETQKEVYVLDQPAKRSQSLQDLIEKDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=697537 NDR85_RS06470 WP_044156383.1 1309753..1310904(+) (coiA) [Bacillus halotolerans strain XE48]
TTGTTTAGTGCTGTGACAGAAGACGGCCAAGTGTTTCACCTCATAGGCAGGCAGAGGAGAGAACAATTAAAGCAGACCAG
GTTTTTCTGCCCGGTGTGTGCAGAGGAGCTCGATGTGAAGCTAGGGTCTCAGAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCACGATAGACATAGAACCTGAGAGCGCCTATCACTTAGAAGGAAAACGGCAGCTTTATGTATGGCTGAAA
ACGCAAAAGGCTTCCCCGCTTTTAGAGCCGTATGTGAAAGAGATTAAACAAAGGCCCGACATCTTGGCAAAAGTAAAGGG
GGATACGCTTGCAGTTGAATACCAATGTGCGACTCTCGCTCCAGATGTCTTTCAAAAAAGAACAGCGGGTTTCAAACAAG
CAGGAATGATACCGCAGTGGATTCTTGGAGGCAGCCGCTTAAAACGGACATCATCATCCTTTTACCAGCTGTCCGATTTC
CATTGGCAGTTTATCAATGCCAGTCCGAACAGTGATCTGTTATGTTACTGCCCCGAAACACATTCTTTCCTGAGGCTCAG
CCGCATGATCCCGTTTTACACAACCCATTTTTACTGCTCCGTCCAAACGATTCCAATCCGCCAGGCAGCGGCTGAAGATT
TATTTTTCACTGAACCAGATTCGTCGTTTAAGCACTCAGATTGGATAGGAGCCATTCTCCGTTTTCGCCGCAAAACTCAT
CGGTTTCTCTCTAAAGATATGAATCGGATCAGGCTTCTGTTTTATGAAAAACGGCAAACACCTCTCTCTTTTCTTCCGAC
AGAGGTGTTTGTTCCTGTAAAGAAAGGAGCTGTTTTTAAGAGTCCCGTTTTTGTATGGCAGGGCTATCTTTATCTGTTTA
TTACGGATCTTGGATATAAACATGCGCCCATTCGCTTTTCAGCCGTTTTGCAGCACTGCAAAATACACATTCATAAAAAG
AACATTCTGCTAAGAGGCGTATACAGGGATCAGGATTTCATTGAGGCGGTTAAACAGTACATTGAGTTTTTGTGCAAGAA
GGGATTTTTGAGGGAGACTCAGAAAGAAGTATATGTGCTGGATCAGCCCGCAAAGCGCAGCCAATCATTACAGGATCTCA
TTGAAAAAGACAGAAGCTGTTTTATCGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

75.335

97.389

0.734