Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   M5E07_RS03930 Genome accession   NZ_CP098732
Coordinates   829987..834471 (+) Length   1494 a.a.
NCBI ID   WP_252222174.1    Uniprot ID   A0AAE9S161
Organism   Acinetobacter tibetensis strain Y-23     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 824987..839471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS03905 (M5E07_03905) - 825470..826111 (-) 642 WP_252222170.1 hypothetical protein -
  M5E07_RS03910 (M5E07_03910) pilG 826395..826778 (+) 384 WP_116760298.1 twitching motility response regulator PilG Regulator
  M5E07_RS03915 (M5E07_03915) - 826799..827167 (+) 369 WP_116760300.1 response regulator -
  M5E07_RS03920 (M5E07_03920) - 827171..827707 (+) 537 WP_116760302.1 chemotaxis protein CheW -
  M5E07_RS03925 (M5E07_03925) - 827756..829828 (+) 2073 WP_252222172.1 methyl-accepting chemotaxis protein -
  M5E07_RS03930 (M5E07_03930) chpA 829987..834471 (+) 4485 WP_252222174.1 Hpt domain-containing protein Regulator
  M5E07_RS03935 (M5E07_03935) - 834476..834937 (+) 462 WP_116760308.1 hypothetical protein -
  M5E07_RS03940 (M5E07_03940) dapE 835002..836135 (-) 1134 WP_252222179.1 succinyl-diaminopimelate desuccinylase -
  M5E07_RS03945 (M5E07_03945) - 836251..836391 (-) 141 WP_016167063.1 entericidin A/B family lipoprotein -
  M5E07_RS03950 (M5E07_03950) - 836507..837385 (-) 879 WP_252222182.1 DUF1853 family protein -
  M5E07_RS03955 (M5E07_03955) - 837482..837856 (+) 375 WP_116760314.1 YbaN family protein -
  M5E07_RS03960 (M5E07_03960) elsL 837898..838404 (+) 507 WP_252222186.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1494 a.a.        Molecular weight: 167943.52 Da        Isoelectric Point: 4.4067

>NTDB_id=697469 M5E07_RS03930 WP_252222174.1 829987..834471(+) (chpA) [Acinetobacter tibetensis strain Y-23]
MKEILKNLVDTTTLPEDSYLEQDAEILEIFVEEIEEIFEELDTVFEQWLANPSDQDTLTTIRRHFHTLKGSGRMVGAKSA
GEVAWAVEDTLNRVIFGSVPLELKIQKFAEMVYRVFQFKLYPQFKSVKPIEIDLRPLVLLGQELQQGRSIEPALEELLSL
ADRLRSSDDLTGLELGASQADIALVEEELSTESSDLQEETTSIFIEEAEEHLATIDHFLKQEAGEVPDYNGLIRALHTLR
GSSSMAHIQQIFDASSKVENLFKTLLQEEIVSTSNETVLLIQYAEFMRDFLHILRQGKVENLSQVDQTFNQAWENYGFNQ
EEFESSANPQGLVSQLIELDIDLLLDAELEFEKRIKNEFPTYVEHLSQKANLLAEHTNNRASQGIHDFIQILDKCYQTLL
AKPTLLNIDYAYELFAQAHQEFIYLFDTLAAGQRISLSAPAEQVLQNLTAFVQQDLEIFDPVEENLSVENTSELEADLTT
ESGHQVAAVNFATLSKRLHSDAKLVDVDEANRQFDEDLLDIFLEEADELLMGMDQDVHTWSSDQSNTAALNNLMRYLHTL
KGGANMIQATHIGLIAHELETIYERIINQQIQASPALIQIVRLVQDNIADRIQTIREEKVDYPAPEAIDILNNIQALVAG
SVVSTATEVVAEQKLPAVEQVVAYEATTIEPPVVQPVHAEVSPFEEEPETSDWVEPVSQSNIVEPSLQVESLVLDESVRS
IVEETFYEEAAEIFDTMEKLLRNWSEQRSDRSLLLQLQRAAHSLKGGARMAEIEPVGAIAYRLESAFEQFAVHHFNSNVY
DPLLQTTITWLRHAIFDHDYTNFDSLKAGLEAIEYADVTVQLPSRNNSSYTQITAPSFEFIQGDGAEPPAMMGEWESFGA
NDQSNEMIRISADLIEKMIDLSGENSINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSEVGRYA
DFDPLEMDQYSSLNQLSKSLAESASDLVDFKSTLAEKIRDTEGLLLQQSRIQAEIQEGLMRTRLVPFSRLLPRLQRIVRQ
TASTLNRPAELIVNNTEGELDRTILERLVTPLEHMLRNAVDHGIEDPAQRQSANKPEIGKIELNISRQGTDVVVEFHDDG
KGIDVNRIKEKAMSLGLMKADQLLEKEEILQFIFHPGFSTAQQITQISGRGVGLDVVQSSIKALGGHVTVDSTLGKGTSF
SIRVPTTVAVSDALMVKSGDQQFALPLAHIERIVRIAPATLETYFNSKEDYFKIDNQSYKLRYISEFVSSQPLPRLSSIA
HSLPVLLIKGNSGQTIALLVDQLIGSRAQIVVKPIGQQFAAIGAITGATILGDGQVCLILDGQNIARQVQTTQRVKHGHD
QRDSYRYSDTRRLIMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENVKPDLMLLDIEMPRMDGFEVTNLVRHH
EVHKQLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQESELLNNIESLLTVKQG

Nucleotide


Download         Length: 4485 bp        

>NTDB_id=697469 M5E07_RS03930 WP_252222174.1 829987..834471(+) (chpA) [Acinetobacter tibetensis strain Y-23]
ATGAAAGAAATATTAAAAAATTTAGTCGATACGACAACGCTTCCAGAAGATAGTTATCTTGAACAAGATGCTGAAATTCT
AGAGATCTTTGTAGAAGAAATTGAAGAAATTTTTGAAGAATTAGATACTGTTTTTGAGCAGTGGTTAGCAAATCCTTCTG
ATCAGGATACTTTAACGACCATTCGACGCCATTTTCACACTTTGAAAGGCTCGGGTCGTATGGTGGGGGCAAAGTCTGCT
GGTGAAGTGGCTTGGGCTGTCGAAGATACTTTAAATCGTGTTATTTTTGGTTCTGTTCCTTTAGAGCTTAAGATCCAGAA
ATTTGCAGAAATGGTTTATCGTGTTTTTCAGTTCAAGCTTTATCCGCAGTTTAAATCGGTCAAACCGATAGAAATTGATT
TAAGACCTTTGGTTCTATTGGGGCAAGAGCTACAACAAGGTCGATCAATTGAGCCTGCACTTGAAGAGTTATTATCTTTA
GCGGATCGACTCAGATCTTCGGATGATTTGACTGGACTGGAATTGGGTGCTTCTCAAGCAGATATTGCCTTGGTGGAAGA
AGAGCTATCTACCGAATCTAGCGATTTGCAAGAAGAGACTACTTCAATTTTCATTGAAGAAGCGGAAGAACATCTTGCAA
CGATTGATCACTTCTTGAAACAAGAAGCTGGCGAAGTGCCTGATTATAATGGGTTGATTCGTGCCTTGCATACTTTGCGA
GGTAGTTCATCTATGGCGCACATCCAGCAAATTTTTGATGCCAGTTCAAAAGTTGAGAATTTATTTAAGACGCTTTTACA
AGAAGAGATTGTTTCAACTTCAAATGAAACAGTATTACTCATTCAGTATGCAGAATTTATGCGAGACTTTTTGCATATTC
TACGTCAGGGTAAAGTCGAAAATTTAAGTCAAGTTGATCAAACTTTTAATCAAGCATGGGAAAATTACGGCTTTAATCAA
GAAGAGTTTGAATCTAGTGCAAATCCACAAGGTTTAGTATCACAATTAATTGAATTGGATATTGATCTGTTATTGGATGC
AGAGCTCGAATTTGAAAAACGGATTAAAAATGAATTTCCTACTTATGTCGAGCACTTAAGTCAAAAAGCAAATTTACTCG
CGGAGCATACCAATAATCGTGCTTCACAGGGGATTCATGATTTTATTCAGATTTTAGATAAATGTTATCAAACGCTTTTA
GCTAAACCGACATTACTCAATATTGACTATGCTTATGAGTTATTTGCTCAGGCGCATCAAGAATTTATCTATCTGTTTGA
TACTTTAGCTGCGGGGCAGCGCATAAGTTTATCTGCACCAGCAGAGCAAGTGCTTCAAAACTTAACGGCATTTGTACAGC
AAGATCTGGAGATTTTTGATCCAGTTGAAGAAAACCTATCTGTAGAAAATACTTCTGAGCTTGAAGCAGATTTAACAACC
GAATCTGGTCATCAGGTCGCTGCCGTTAACTTTGCGACTTTGTCAAAACGCTTGCACAGTGATGCGAAATTAGTGGATGT
CGATGAAGCCAATCGACAATTTGATGAAGACCTGTTGGATATCTTCCTCGAAGAAGCTGATGAGTTGCTGATGGGGATGG
ATCAGGATGTTCATACATGGAGCAGTGATCAATCTAATACGGCGGCATTGAATAATTTAATGCGCTATTTGCATACCCTA
AAGGGTGGTGCAAACATGATTCAAGCGACGCATATTGGTTTAATTGCACATGAATTAGAAACCATTTATGAGCGTATTAT
TAATCAGCAAATTCAAGCATCTCCTGCTTTGATTCAGATTGTTCGTTTGGTTCAAGACAACATTGCCGATCGTATTCAAA
CGATTCGAGAAGAAAAAGTTGATTATCCAGCTCCAGAAGCGATTGATATTTTAAATAATATTCAAGCTTTGGTTGCGGGA
TCTGTGGTATCTACAGCTACAGAGGTGGTTGCAGAACAAAAACTGCCTGCTGTTGAGCAGGTGGTTGCATATGAAGCTAC
GACCATTGAACCGCCAGTTGTACAGCCTGTGCACGCGGAAGTCAGTCCATTTGAAGAAGAACCTGAAACTTCCGATTGGG
TTGAACCAGTATCACAATCGAACATTGTTGAGCCATCACTTCAAGTTGAATCTTTAGTACTTGATGAGAGTGTACGCTCA
ATTGTTGAAGAAACTTTCTACGAAGAAGCCGCAGAAATTTTCGATACCATGGAAAAGTTACTGCGGAATTGGTCCGAGCA
GCGTAGTGATCGTAGTTTATTGCTTCAATTGCAACGTGCAGCACATAGCCTTAAAGGTGGTGCGCGCATGGCTGAAATTG
AGCCAGTAGGGGCTATTGCATATCGTTTAGAAAGTGCTTTTGAACAGTTTGCAGTTCATCACTTCAATTCAAATGTTTAT
GATCCATTACTACAAACCACGATTACATGGTTAAGACATGCAATTTTTGACCATGATTATACTAATTTCGATAGTTTAAA
AGCGGGCTTGGAAGCAATTGAATATGCAGATGTCACTGTTCAATTGCCAAGCCGTAATAACTCTAGCTACACGCAGATTA
CTGCGCCAAGCTTTGAATTTATTCAAGGGGATGGAGCAGAACCACCTGCAATGATGGGCGAGTGGGAAAGCTTTGGAGCC
AATGATCAATCAAATGAGATGATTCGAATTTCAGCTGATTTGATTGAGAAGATGATTGATTTGTCGGGCGAAAATTCGAT
TAACCGTTCACGTATTGAAATGGACCTTGGTCAATTAGGCAATACATTGAATGAAATGGAATTGGCGATTAAGCGTCTTG
CAGACCAGTTACGTCGAATGGAAGGTGAATTAGAGTCACAAATTATTGCCAAACATGGCAGTGAAGTTGGTCGATATGCT
GACTTTGACCCATTAGAAATGGACCAATATTCATCGTTAAATCAGTTGTCTAAATCCTTGGCGGAATCTGCTTCGGACTT
GGTCGATTTCAAGAGTACTTTGGCTGAAAAAATTCGTGATACGGAAGGTTTATTATTACAACAATCTCGTATTCAGGCCG
AAATTCAAGAAGGCTTAATGCGAACACGCTTGGTGCCTTTCTCGCGTTTATTACCTCGTTTGCAACGTATTGTGCGCCAG
ACAGCTTCAACGCTAAACCGACCTGCTGAGTTAATTGTCAACAATACTGAAGGGGAACTGGATCGTACTATTCTTGAGCG
TTTAGTGACCCCGCTTGAGCATATGTTACGAAATGCTGTCGACCATGGTATTGAAGACCCTGCACAGCGTCAGTCGGCAA
ACAAGCCTGAAATTGGAAAAATTGAACTCAATATTAGCCGTCAAGGCACAGATGTTGTAGTCGAATTCCATGATGATGGT
AAAGGGATTGATGTAAATCGAATCAAAGAAAAAGCGATGTCTTTAGGTTTGATGAAAGCTGATCAATTACTTGAAAAAGA
AGAGATTCTACAGTTTATTTTCCATCCAGGTTTCAGTACAGCGCAGCAGATTACCCAAATTTCTGGACGTGGTGTTGGTT
TGGATGTCGTGCAAAGCTCGATTAAAGCGTTGGGTGGTCATGTCACTGTAGACTCAACACTTGGAAAAGGAACAAGTTTT
AGTATCCGCGTTCCAACCACTGTGGCTGTAAGTGACGCCTTAATGGTGAAATCTGGCGATCAGCAATTCGCACTTCCTTT
GGCGCACATTGAGCGTATTGTTCGAATTGCACCAGCAACTTTGGAAACTTACTTTAATAGTAAAGAAGATTATTTCAAGA
TTGATAACCAAAGCTATAAGTTACGTTATATTTCGGAATTTGTTTCCAGTCAGCCTTTACCGCGCTTAAGCAGTATTGCT
CATTCGTTGCCTGTGCTGTTAATTAAGGGCAATAGTGGTCAAACCATTGCCTTATTGGTTGATCAGTTGATTGGATCACG
TGCACAAATTGTGGTGAAACCAATCGGTCAGCAATTTGCTGCAATTGGTGCAATTACTGGTGCAACCATTCTGGGTGATG
GTCAGGTGTGTTTGATTCTGGATGGTCAAAATATTGCCCGTCAAGTGCAAACGACACAACGTGTGAAACATGGACATGAC
CAACGTGATTCATACCGTTACAGTGATACACGTCGTTTAATTATGATTGTGGATGACTCGGTTACAGTACGTAAAGTGAC
CTCACGCTTGTTAGAACGACAAGGTTATGATGTGGTCACTGCAAAAGATGGTGTTGATGCTATAGAGCAGTTAGAAAACG
TCAAACCAGATTTAATGCTACTGGACATTGAAATGCCACGTATGGATGGATTTGAAGTGACGAACTTGGTTCGCCATCAT
GAAGTTCATAAGCAATTGCCAATTATCATGATTACATCACGTACAGGTGAAAAGCATCGTGAACGCGCATTTAGTTTGGG
TGTAACTCATTATATGGGCAAACCATTCCAAGAGTCTGAATTGTTGAATAACATTGAAAGTCTTTTGACTGTGAAACAGG
GGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.474

100

0.614