Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M5E07_RS01625 Genome accession   NZ_CP098732
Coordinates   351849..352487 (-) Length   212 a.a.
NCBI ID   WP_252221334.1    Uniprot ID   A0AAE9LRX8
Organism   Acinetobacter tibetensis strain Y-23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346849..357487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS01590 (M5E07_01590) mlaE 347142..347921 (+) 780 WP_116761088.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  M5E07_RS01595 (M5E07_01595) - 347921..348589 (+) 669 WP_252221328.1 outer membrane lipid asymmetry maintenance protein MlaD -
  M5E07_RS01600 (M5E07_01600) - 348609..349241 (+) 633 WP_252221330.1 ABC transporter substrate-binding protein -
  M5E07_RS01605 (M5E07_01605) - 349254..349538 (+) 285 WP_116761093.1 STAS domain-containing protein -
  M5E07_RS01610 (M5E07_01610) - 349641..350654 (-) 1014 WP_116761095.1 CorA family divalent cation transporter -
  M5E07_RS01615 (M5E07_01615) - 350809..351408 (+) 600 WP_116761097.1 TIGR00730 family Rossman fold protein -
  M5E07_RS01620 (M5E07_01620) - 351408..351809 (+) 402 WP_252221332.1 NUDIX domain-containing protein -
  M5E07_RS01625 (M5E07_01625) comF 351849..352487 (-) 639 WP_252221334.1 phosphoribosyltransferase family protein Machinery gene
  M5E07_RS01630 (M5E07_01630) recG 352474..354519 (-) 2046 WP_252221336.1 ATP-dependent DNA helicase RecG -
  M5E07_RS01635 (M5E07_01635) - 354553..355362 (+) 810 WP_252221339.1 NAD(P)H-binding protein -
  M5E07_RS01640 (M5E07_01640) - 355559..355786 (+) 228 WP_165815699.1 DUF6500 family protein -
  M5E07_RS01645 (M5E07_01645) - 356240..356656 (-) 417 WP_252221341.1 NF045616 family extracytoplasmic (lipo)protein -
  M5E07_RS01650 (M5E07_01650) - 356660..357328 (-) 669 WP_252221343.1 zinc protease -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24735.75 Da        Isoelectric Point: 9.5605

>NTDB_id=697461 M5E07_RS01625 WP_252221334.1 351849..352487(-) (comF) [Acinetobacter tibetensis strain Y-23]
MPMFKPFLSSAQQWLHSVLPCQFCGLERGRHASLCQDCWNHLPWFKQSVQRQEIEVQVACHYAYPIDRVIQQFKYEQQLH
FQILLTGLLKQLEYRQIQAIVPMPISTQRLAERGYNQSIILAQRLGQHLNIPVWQPIQRQHQHAQKGLSRLERLDQIEQQ
FKIAPTNRQRFRRVLMLDDVVTTGSSLKTLERALAELGCRKIEAVCIAAAQA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=697461 M5E07_RS01625 WP_252221334.1 351849..352487(-) (comF) [Acinetobacter tibetensis strain Y-23]
ATGCCTATGTTTAAACCTTTTTTATCTAGCGCTCAGCAATGGCTGCATTCAGTACTCCCATGTCAGTTTTGTGGTCTTGA
GCGTGGTCGTCATGCCAGCCTCTGTCAAGATTGCTGGAACCATTTACCTTGGTTCAAACAATCCGTGCAACGTCAAGAAA
TTGAGGTTCAAGTCGCCTGCCATTATGCCTATCCCATTGATCGTGTGATTCAGCAATTTAAATACGAGCAACAACTACAT
TTCCAAATCTTGCTGACTGGACTACTGAAGCAGCTCGAATATCGACAAATTCAGGCGATTGTCCCTATGCCGATTTCGAC
TCAGCGCTTAGCCGAACGGGGTTATAACCAAAGTATCATTCTGGCACAACGTTTGGGACAACACTTAAACATTCCAGTCT
GGCAACCCATTCAACGGCAGCATCAACATGCACAAAAAGGCTTAAGCCGTTTAGAACGGCTGGATCAAATCGAACAGCAA
TTTAAAATTGCCCCGACAAATCGACAGCGTTTTCGTCGCGTGTTAATGCTGGATGATGTAGTGACGACAGGTAGCTCGCT
CAAAACCTTAGAACGAGCACTTGCCGAATTGGGCTGCCGAAAAATTGAAGCGGTCTGTATTGCAGCAGCTCAAGCCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(121-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

57.346

99.528

0.571
  comF Acinetobacter baumannii strain A118

56.872

99.528

0.566