Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LC189_RS13130 Genome accession   NZ_CP098727
Coordinates   2692766..2693161 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SauR3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2687766..2698161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC189_RS13100 (LC189_013100) - 2688968..2689372 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LC189_RS13105 (LC189_013105) - 2689767..2689859 (+) 93 WP_031867531.1 hypothetical protein -
  LC189_RS13110 (LC189_013110) - 2689991..2690224 (+) 234 WP_000384523.1 DUF1146 family protein -
  LC189_RS13115 (LC189_013115) murA 2690335..2691600 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LC189_RS13120 (LC189_013120) fabZ 2691634..2692074 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LC189_RS13125 (LC189_013125) - 2692132..2692572 (-) 441 WP_000846746.1 YwpF-like family protein -
  LC189_RS13130 (LC189_013130) ssb 2692766..2693161 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LC189_RS13135 (LC189_013135) sceD 2693550..2694245 (+) 696 WP_000752000.1 lytic transglycosylase SceD -
  LC189_RS13140 (LC189_013140) tenA 2694632..2695321 (+) 690 WP_000396067.1 thiaminase II -
  LC189_RS13145 (LC189_013145) thiD 2695314..2696144 (+) 831 WP_000594947.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LC189_RS13150 (LC189_013150) thiM 2696128..2696919 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LC189_RS13155 (LC189_013155) thiE 2696921..2697562 (+) 642 WP_000483164.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=697423 LC189_RS13130 WP_000932694.1 2692766..2693161(+) (ssb) [Staphylococcus aureus strain SauR3]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=697423 LC189_RS13130 WP_000932694.1 2692766..2693161(+) (ssb) [Staphylococcus aureus strain SauR3]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992