Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LC189_RS07150 Genome accession   NZ_CP098727
Coordinates   1455554..1456123 (-) Length   189 a.a.
NCBI ID   WP_000872864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SauR3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1450554..1461123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC189_RS07110 (LC189_007110) - 1451028..1451636 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  LC189_RS07115 (LC189_007115) rplL 1451811..1452179 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LC189_RS07120 (LC189_007120) rplJ 1452222..1452722 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  LC189_RS07125 (LC189_007125) rplA 1452994..1453686 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LC189_RS07130 (LC189_007130) rplK 1453894..1454316 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LC189_RS07135 (LC189_007135) nusG 1454497..1455045 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LC189_RS07140 (LC189_007140) secE 1455058..1455240 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LC189_RS07145 (LC189_007145) rpmG 1455296..1455439 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LC189_RS07150 (LC189_007150) sigH 1455554..1456123 (-) 570 WP_000872864.1 RNA polymerase sigma factor Regulator
  LC189_RS07155 (LC189_007155) - 1456204..1456728 (-) 525 WP_000664738.1 NYN domain-containing protein -
  LC189_RS07160 (LC189_007160) rlmB 1456728..1457474 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LC189_RS07165 (LC189_007165) - 1457482..1457886 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LC189_RS07170 (LC189_007170) cysS 1457879..1459279 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  LC189_RS07175 (LC189_007175) cysE 1459263..1459910 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=697413 LC189_RS07150 WP_000872864.1 1455554..1456123(-) (sigH) [Staphylococcus aureus strain SauR3]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLKPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNQLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=697413 LC189_RS07150 WP_000872864.1 1455554..1456123(-) (sigH) [Staphylococcus aureus strain SauR3]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTAAAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATCAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974