Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HXS63_RS06065 Genome accession   NZ_AP023226
Coordinates   1258858..1259595 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain YJ3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1253858..1264595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS63_RS06035 yfiL 1254016..1254381 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  HXS63_RS06040 aroF 1254591..1255661 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  HXS63_RS06045 tyrA 1255672..1256793 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  HXS63_RS06050 pheA 1256836..1257996 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  HXS63_RS06055 pheL 1258095..1258142 (-) 48 WP_010723158.1 phe operon leader peptide -
  HXS63_RS06060 raiA 1258246..1258587 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  HXS63_RS06065 comL 1258858..1259595 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  HXS63_RS06070 rluD 1259730..1260710 (+) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HXS63_RS06075 yfiH 1260707..1261438 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  HXS63_RS06080 clpC 1261568..1264141 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=69721 HXS63_RS06065 WP_000197686.1 1258858..1259595(-) (comL) [Escherichia coli strain YJ3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=69721 HXS63_RS06065 WP_000197686.1 1258858..1259595(-) (comL) [Escherichia coli strain YJ3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment