Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NEA10_RS07730 Genome accession   NZ_CP098611
Coordinates   1803633..1803998 (-) Length   121 a.a.
NCBI ID   WP_252664748.1    Uniprot ID   -
Organism   Phormidium yuhuli AB48     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1798633..1808998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEA10_RS07725 (NEA10_07725) - 1799713..1803480 (+) 3768 WP_252664747.1 response regulator -
  NEA10_RS07730 (NEA10_07730) pilH 1803633..1803998 (-) 366 WP_252664748.1 response regulator transcription factor Machinery gene
  NEA10_RS07735 (NEA10_07735) - 1804148..1805668 (-) 1521 WP_252664749.1 MBOAT family protein -
  NEA10_RS07740 (NEA10_07740) - 1805783..1806304 (-) 522 WP_252664750.1 CAP domain-containing protein -
  NEA10_RS07745 (NEA10_07745) - 1806335..1807909 (-) 1575 WP_252664751.1 iron uptake porin -
  NEA10_RS07750 (NEA10_07750) - 1807980..1808942 (-) 963 WP_252664752.1 serine protease -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13610.97 Da        Isoelectric Point: 7.7447

>NTDB_id=697033 NEA10_RS07730 WP_252664748.1 1803633..1803998(-) (pilH) [Phormidium yuhuli AB48]
MSTILVVEDSTSQREMIANLLRNQGMQVVATRSGVEALKYLKANTPDLVVLDIVMPNPNGYDVCRKMKAHPRTKDIPVIM
CSCKGEEFDRYWGMKVGADAYIAKPFHPDEMINAVRQLLVL

Nucleotide


Download         Length: 366 bp        

>NTDB_id=697033 NEA10_RS07730 WP_252664748.1 1803633..1803998(-) (pilH) [Phormidium yuhuli AB48]
ATGAGTACGATTTTAGTCGTTGAGGACAGTACCTCCCAGCGAGAGATGATTGCTAACCTGTTACGAAATCAGGGAATGCA
GGTAGTCGCAACGCGCAGTGGTGTGGAGGCCTTGAAGTATCTTAAAGCCAATACCCCTGATTTGGTGGTATTAGATATCG
TCATGCCCAATCCCAACGGGTATGATGTCTGTCGCAAGATGAAGGCACATCCCCGTACCAAAGACATTCCAGTCATCATG
TGTTCCTGCAAGGGAGAGGAGTTCGATCGCTACTGGGGCATGAAAGTCGGGGCCGATGCCTATATTGCTAAACCCTTCCA
CCCCGATGAGATGATTAATGCCGTTCGTCAACTCCTGGTTCTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

62.185

98.347

0.612
  pilG Acinetobacter baumannii strain A118

39.823

93.388

0.372