Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDQ67_RS10970 Genome accession   NZ_CP098546
Coordinates   2084240..2084617 (-) Length   125 a.a.
NCBI ID   WP_258854340.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9126     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2079240..2089617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ67_RS10945 (NDQ67_10905) thiC 2079789..2081691 (+) 1903 Protein_2108 phosphomethylpyrimidine synthase ThiC -
  NDQ67_RS10950 (NDQ67_10910) - 2082180..2082530 (-) 351 Protein_2109 pilin -
  NDQ67_RS10955 (NDQ67_10915) - 2082570..2082923 (-) 354 Protein_2110 pilin -
  NDQ67_RS10960 (NDQ67_10920) - 2082950..2083311 (-) 362 Protein_2111 pilin -
  NDQ67_RS10965 (NDQ67_10925) - 2083351..2083725 (-) 375 Protein_2112 pilin -
  NDQ67_RS10970 (NDQ67_10930) pilE 2084240..2084617 (-) 378 WP_258854340.1 pilin Machinery gene
  NDQ67_RS10975 (NDQ67_10935) - 2084642..2085028 (-) 387 Protein_2114 pilin -
  NDQ67_RS10980 (NDQ67_10940) - 2085506..2085856 (-) 351 Protein_2115 pilin -
  NDQ67_RS10985 (NDQ67_10945) - 2085897..2086217 (-) 321 Protein_2116 pilin -
  NDQ67_RS10990 (NDQ67_10950) - 2086236..2086559 (-) 324 Protein_2117 pilin -
  NDQ67_RS10995 (NDQ67_10955) - 2086563..2086871 (+) 309 Protein_2118 NAD(P)-dependent oxidoreductase -
  NDQ67_RS11000 (NDQ67_10960) metG 2086946..2089000 (-) 2055 WP_003699323.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 13498.28 Da        Isoelectric Point: 10.2133

>NTDB_id=696944 NDQ67_RS10970 WP_258854340.1 2084240..2084617(-) (pilE) [Neisseria gonorrhoeae strain 9126]
MSNTSKKSAVAGYCPNHGTWPKDNTSAGVANPTEIKGKYVKEVEVKNGVVTAKMKSDGVNKEIQGKRLSLWAKRENGSVK
WFCGQPVTRADGKAGKADDVTKDDAGKKIETKHLPSTCRDTSMTN

Nucleotide


Download         Length: 378 bp        

>NTDB_id=696944 NDQ67_RS10970 WP_258854340.1 2084240..2084617(-) (pilE) [Neisseria gonorrhoeae strain 9126]
ATTTCAAACACTTCCAAAAAATCAGCCGTTGCCGGGTATTGCCCGAATCACGGCACATGGCCGAAAGACAACACTTCTGC
CGGCGTGGCAAACCCCACCGAAATCAAAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTCACCGCCAAAA
TGAAATCAGACGGCGTAAACAAAGAAATCCAAGGCAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAA
TGGTTCTGCGGACAGCCGGTTACGCGCGCCGACGGCAAAGCCGGCAAAGCCGACGACGTCACCAAAGACGACGCCGGCAA
AAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATACGTCAATGACAAATTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.795

93.6

0.672
  pilE Neisseria gonorrhoeae strain FA1090

69.231

93.6

0.648