Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NDQ64_RS10270 Genome accession   NZ_CP098544
Coordinates   1950708..1951103 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10296     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1945708..1956103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ64_RS10265 (NDQ64_10160) - 1950487..1950603 (+) 117 Protein_1982 competence protein ComE -
  NDQ64_RS10270 (NDQ64_10165) comE 1950708..1951103 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  NDQ64_RS12040 - 1951037..1951184 (-) 148 Protein_1984 peptidase -
  NDQ64_RS10275 (NDQ64_10170) - 1951628..1951957 (-) 330 Protein_1985 transposase -
  NDQ64_RS10280 (NDQ64_10175) dnaJ 1952091..1953212 (+) 1122 WP_033910709.1 molecular chaperone DnaJ -
  NDQ64_RS10285 (NDQ64_10180) - 1953407..1955425 (+) 2019 WP_260244338.1 OPT family oligopeptide transporter -
  NDQ64_RS10290 (NDQ64_10185) rfbC 1955469..1956026 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=696899 NDQ64_RS10270 WP_003703428.1 1950708..1951103(+) (comE) [Neisseria gonorrhoeae strain 10296]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=696899 NDQ64_RS10270 WP_003703428.1 1950708..1951103(+) (comE) [Neisseria gonorrhoeae strain 10296]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1