Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDQ64_RS09510 Genome accession   NZ_CP098544
Coordinates   1809788..1810183 (+) Length   131 a.a.
NCBI ID   WP_311201988.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10296     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1804788..1815183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ64_RS09485 (NDQ64_09380) - 1806912..1807226 (-) 315 Protein_1835 NAD(P)-dependent oxidoreductase -
  NDQ64_RS09490 (NDQ64_09385) - 1807224..1807553 (+) 330 Protein_1836 pilin -
  NDQ64_RS09495 (NDQ64_09390) - 1807580..1807941 (+) 362 Protein_1837 pilin -
  NDQ64_RS11900 - 1808433..1808654 (+) 222 Protein_1838 pilin -
  NDQ64_RS11905 - 1808641..1809003 (+) 363 Protein_1839 pilin -
  NDQ64_RS09505 (NDQ64_09400) - 1809384..1809785 (+) 402 Protein_1840 pilin -
  NDQ64_RS09510 (NDQ64_09405) pilE 1809788..1810183 (+) 396 WP_311201988.1 pilin Machinery gene
  NDQ64_RS09515 (NDQ64_09410) thiC 1810672..1812573 (-) 1902 WP_041421456.1 phosphomethylpyrimidine synthase ThiC -
  NDQ64_RS09525 (NDQ64_09420) - 1813171..1814046 (+) 876 WP_003686971.1 NUDIX hydrolase family protein -
  NDQ64_RS09530 (NDQ64_09425) - 1814055..1814996 (+) 942 WP_003686969.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14410.20 Da        Isoelectric Point: 10.1083

>NTDB_id=696894 NDQ64_RS09510 WP_311201988.1 1809788..1810183(+) (pilE) [Neisseria gonorrhoeae strain 10296]
MHETPRADFKHFQKSAVAGYCPNHGKWPKDNTSAGVANPTEIKGKYVQSVTVANGVVTAQMKSDGVNKEIKGKRLSLWGR
REAGSVKWFCGQPVKRTAKDGTDDVAKDGKDNEKIDTKHLPSTCRDKHSDT

Nucleotide


Download         Length: 396 bp        

>NTDB_id=696894 NDQ64_RS09510 WP_311201988.1 1809788..1810183(+) (pilE) [Neisseria gonorrhoeae strain 10296]
TTGCACGAAACACCACGCGCCGATTTCAAACACTTCCAAAAATCAGCCGTTGCCGGGTATTGCCCGAATCACGGCAAATG
GCCGAAAGACAACACTTCTGCCGGCGTGGCAAACCCCACCGAAATCAAAGGCAAATATGTTCAAAGCGTTACGGTCGCAA
ACGGCGTCGTTACCGCCCAAATGAAATCAGACGGCGTAAACAAAGAAATCAAAGGCAAAAGACTCTCCCTGTGGGGCAGG
CGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCACCGCCAAAGACGGCACCGACGACGTCGCCAA
AGACGGCAAAGACAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAACACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(13-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.429

90.84

0.649
  pilE Neisseria gonorrhoeae strain FA1090

68.067

90.84

0.618