Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   NDQ64_RS09175 Genome accession   NZ_CP098544
Coordinates   1744722..1745420 (-) Length   232 a.a.
NCBI ID   WP_003689902.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10296     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1739722..1750420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ64_RS09160 (NDQ64_09055) - 1740083..1741084 (-) 1002 WP_003691902.1 peptidylprolyl isomerase -
  NDQ64_RS09165 (NDQ64_09060) - 1741186..1743591 (-) 2406 WP_003698952.1 LPS-assembly protein LptD -
  NDQ64_RS09170 (NDQ64_09065) amgK 1743661..1744665 (+) 1005 WP_003689901.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  NDQ64_RS09175 (NDQ64_09070) dsbA1 1744722..1745420 (-) 699 WP_003689902.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NDQ64_RS09180 (NDQ64_09075) murJ 1745858..1747396 (+) 1539 WP_003689904.1 murein biosynthesis integral membrane protein MurJ -
  NDQ64_RS09185 (NDQ64_09080) - 1747529..1748488 (+) 960 WP_003697622.1 YheT family hydrolase -
  NDQ64_RS09190 (NDQ64_09085) trpC 1748539..1749321 (+) 783 WP_003689906.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25235.89 Da        Isoelectric Point: 5.6758

>NTDB_id=696891 NDQ64_RS09175 WP_003689902.1 1744722..1745420(-) (dsbA1) [Neisseria gonorrhoeae strain 10296]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAR
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLPLARLAAAVDMAAAESKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARAGKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=696891 NDQ64_RS09175 WP_003689902.1 1744722..1745420(-) (dsbA1) [Neisseria gonorrhoeae strain 10296]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGACTGGTCGAAGGGCAAAACTACACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAGGTTGAAGTGCTTGAGTTTTTCGGCTATTTTTGTCCGCACTGCGCCCGC
CTCGAACCTGTTTTGAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGCCGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGAAAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAATCCCCCGAAAGTCAGGCGCGCGCCGGCAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGTGAAGAACAAAAAGCCGCGCAGTAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

97.845

100

0.978
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621