Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NDQ65_RS09905 Genome accession   NZ_CP098538
Coordinates   1882974..1883369 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain ATCC 49226     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1877974..1888369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ65_RS09885 (NDQ65_09830) rfbC 1878051..1878608 (+) 558 WP_003690256.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  NDQ65_RS09890 (NDQ65_09835) - 1878652..1880670 (-) 2019 WP_003690255.1 OPT family oligopeptide transporter -
  NDQ65_RS09895 (NDQ65_09840) dnaJ 1880865..1881986 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  NDQ65_RS09900 (NDQ65_09845) - 1882120..1882449 (+) 330 Protein_1900 transposase -
  NDQ65_RS09905 (NDQ65_09850) comE 1882974..1883369 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  NDQ65_RS09910 (NDQ65_09855) - 1883474..1883590 (-) 117 Protein_1902 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=696800 NDQ65_RS09905 WP_003703428.1 1882974..1883369(-) (comE) [Neisseria gonorrhoeae strain ATCC 49226]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=696800 NDQ65_RS09905 WP_003703428.1 1882974..1883369(-) (comE) [Neisseria gonorrhoeae strain ATCC 49226]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1