Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDQ63_RS11020 Genome accession   NZ_CP098536
Coordinates   2100359..2100766 (-) Length   135 a.a.
NCBI ID   WP_260283866.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10771     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2095359..2105766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ63_RS11000 (NDQ63_10920) pilA 2095831..2097084 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDQ63_RS11005 (NDQ63_10925) - 2097353..2098072 (-) 720 WP_260283865.1 opacity family porin -
  NDQ63_RS11010 (NDQ63_10930) - 2098530..2099024 (-) 495 Protein_2119 pilin -
  NDQ63_RS11015 (NDQ63_10935) - 2099444..2099834 (-) 391 Protein_2120 pilin -
  NDQ63_RS11020 (NDQ63_10940) pilE 2100359..2100766 (-) 408 WP_260283866.1 pilin Machinery gene
  NDQ63_RS11025 (NDQ63_10945) lpxC 2100872..2101795 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDQ63_RS11035 (NDQ63_10955) - 2102287..2102649 (-) 363 Protein_2123 pilin -
  NDQ63_RS11040 (NDQ63_10960) - 2102690..2102905 (-) 216 Protein_2124 pilin -
  NDQ63_RS11045 (NDQ63_10965) - 2103278..2103409 (-) 132 WP_010356054.1 hypothetical protein -
  NDQ63_RS11050 (NDQ63_10970) - 2103491..2104179 (-) 689 Protein_2126 SprT family zinc-dependent metalloprotease -
  NDQ63_RS11055 (NDQ63_10975) - 2104176..2104919 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  NDQ63_RS11060 (NDQ63_10980) gmhB 2104949..2105512 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14762.57 Da        Isoelectric Point: 7.1349

>NTDB_id=696757 NDQ63_RS11020 WP_260283866.1 2100359..2100766(-) (pilE) [Neisseria gonorrhoeae strain 10771]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNDKAGVASPDKIIGKYVKQVEVKNGVVTAEMASTGVNKEIQ
GKKLSLWAKRQDGSVKWFCGQPVTRAKDDNVADAAKDAIDTKHLPSTCRDTSMTN

Nucleotide


Download         Length: 408 bp        

>NTDB_id=696757 NDQ63_RS11020 WP_260283866.1 2100359..2100766(-) (pilE) [Neisseria gonorrhoeae strain 10771]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCAA
AGACGACAACGTTGCCGACGCCGCCAAAGACGCCATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATACGTCAATGA
CAAATTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

74.815

100

0.748
  pilE Neisseria gonorrhoeae MS11

74.627

99.259

0.741